Reorganise repository using standard package layout

1 files changed, 0 insertions, 75 deletions

diff --git a/pkg/man/endpoint.Rd b/pkg/man/endpoint.Rd
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--- a/pkg/man/endpoint.Rd
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-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/endpoint.R
-\name{endpoint}
-\alias{endpoint}
-\alias{soil_DT50}
-\alias{soil_Kfoc}
-\alias{soil_N}
-\alias{soil_sorption}
-\title{Retrieve endpoint information from the chyaml field of a chent object}
-\usage{
-endpoint(chent, medium = "soil", type = c("degradation", "sorption"),
-  lab_field = c(NA, "laboratory", "field"), redox = c(NA, "aerobic",
-  "anaerobic"), value = c("DT50ref", "Kfoc", "N"), aggregator = geomean,
-  raw = FALSE, signif = 3)
-
-soil_DT50(chent, aggregator = geomean, signif = 3,
-  lab_field = "laboratory", value = "DT50ref", redox = "aerobic",
-  raw = FALSE)
-
-soil_Kfoc(chent, aggregator = geomean, signif = 3, value = "Kfoc",
-  raw = FALSE)
-
-soil_N(chent, aggregator = mean, signif = 3, raw = FALSE)
-
-soil_sorption(chent, values = c("Kfoc", "N"), aggregators = c(Kfoc =
-  geomean, Koc = geomean, N = mean), signif = c(Kfoc = 3, N = 3),
-  raw = FALSE)
-}
-\arguments{
-\item{chent}{The \code{\link{chent}} object to get the information from}
-
-\item{medium}{The medium for which information is sought}
-
-\item{type}{The information type}
-
-\item{lab_field}{If not NA, do we want laboratory or field endpoints}
-
-\item{redox}{If not NA, are we looking for aerobic or anaerobic data}
-
-\item{value}{The name of the value we want. The list given in the 
-usage section is not exclusive}
-
-\item{aggregator}{The aggregator function. Can be mean, 
-\code{\link{geomean}}, or identity, for example.}
-
-\item{raw}{Should the number(s) be returned as stored in the chent
-object (could be a character value) to retain original information
-about precision?}
-
-\item{signif}{How many significant digits do we want}
-
-\item{values}{The values to be returned}
-
-\item{aggregators}{A named vector of aggregator functions to be used}
-}
-\value{
-The result from applying the aggregator function to
-  the values converted to a numeric vector, rounded to the
-  given number of significant digits, or, if raw = TRUE,
-  the values as a character value, retaining any implicit
-  information on precision that may be present.
-}
-\description{
-R6 class objects of class \code{\link{chent}} represent chemical entities
-and can hold a list of information loaded from a chemical yaml file in their
-chyaml field. Such information is extracted and optionally aggregated by
-this function.
-}
-\details{
-The functions \code{soil_*} are functions to extract soil specific endpoints.
-For the Freundlich exponent, the capital letter \code{N} is used in order to
-facilitate dealing with such data in R. In pesticide fate modelling, this
-exponent is often called 1/n.
-}
-