Add endpoint and GUS functions, roxygenize

1 files changed, 45 insertions, 0 deletions

diff --git a/pkg/man/endpoint.Rd b/pkg/man/endpoint.Rd
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+% Generated by roxygen2: do not edit by hand
+% Please edit documentation in R/endpoint.R
+\name{endpoint}
+\alias{endpoint}
+\title{Retrieve endpoint information from the chyaml field of a chent object}
+\usage{
+endpoint(chent, medium = "soil", type = c("degradation", "sorption"),
+  lab_field = c(NA, "laboratory", "field"), redox = c(NA, "aerobic",
+  "anaerobic"), value = c("DT50ref", "Kfoc", "N"), aggregator = geomean,
+  raw = FALSE, signif = 3)
+}
+\arguments{
+\item{chent}{The \code{\link{chent}} object to get the information from}
+
+\item{medium}{The medium for which information is sought}
+
+\item{type}{The information type}
+
+\item{lab_field}{If not NA, do we want laboratory or field endpoints}
+
+\item{redox}{If not NA, are we looking for aerobic or anaerobic data}
+
+\item{value}{The name of the value we want. The list given in the 
+usage section is not exclusive}
+
+\item{aggregator}{The aggregator function. Can be mean, 
+\code{\link{geomean}}, or identity, for example.}
+
+\item{signif}{How many significant digits do we want}
+}
+\value{
+The result from applying the aggregator function to
+  the values converted to a numeric vector, rounded to the
+  given number of significant digits, or, if raw = TRUE,
+  the values as a character value, retaining any implicit
+  information on precision that may be present.
+
+}
+\description{
+R6 class objects of class \code{\link{chent}} represent chemical entities
+and can hold a list of information loaded from a chemical yaml file in their
+chyaml field. Such information is extracted and optionally aggregated by
+this function.
+}
+