Merge branch 'master' into pfm_chent

Conflicts:
	pkg/DESCRIPTION
	pkg/NAMESPACE

4 files changed, 70 insertions, 0 deletions

diff --git a/pkg/tests/testthat/test_PEC_sed.R b/pkg/tests/testthat/test_PEC_sed.R
new file mode 100644
index 0000000..d83be0f
--- /dev/null
+++ b/pkg/tests/testthat/test_PEC_sed.R
@@ -0,0 +1,9 @@
+context("Simple PEC sediment calculations")
+
+test_that("PEC_sw_sed calculates correctly using the percentage method", {
+  # Application of 100 g/ha, 1 m spray drift distance (2.77% drift input), 50% in sediment,
+  # default assumptions of CRD spreadsheet (5 cm sediment depth, 1.3 kg/L sediment density)
+  # Reference value calculated with CRD spreadsheet
+  PEC_sw_100_1_m <- PEC_sw_drift_ini(100, distances = 1)
+  expect_equivalent(round(PEC_sw_sed(PEC_sw_100_1_m, percentage = 50), 3), 2.131)
+})
diff --git a/pkg/tests/testthat/test_PEC_sw_drift_ini.R b/pkg/tests/testthat/test_PEC_sw_drift_ini.R
new file mode 100644
index 0000000..2480e5c
--- /dev/null
+++ b/pkg/tests/testthat/test_PEC_sw_drift_ini.R
@@ -0,0 +1,15 @@
+library(pfm)
+context("Simple PEC surface water calculations with drift entry")
+
+test_that("PEC_sw_drift gives the same results as the CRD PEC calculator", {
+  # One application of 30 g/ha to field crops calculated with UK PEC calculator published by CRD
+  expect_equal(round(PEC_sw_drift_ini(30), 3), 
+               c('1 m' = 0.277, '5 m' = 0.057, '10 m' = 0.029, '20 m' = 0.015))
+
+  # 7 applications of 30 g/ha to field crops calculated with UK PEC calculator, initial PEC
+  expect_equal(round(PEC_sw_drift_ini(30, 7), 3), 
+               c('1 m' = 0.161, '5 m' = 0.033, '10 m' = 0.017, '20 m' = 0.008))
+
+  # 4 applications of 30 g/ha to late fruit crops calculated with UK PEC calculator published by CRD (uses different drift values from SANCO aquatic guidance)
+  #expect_equal(round(PEC_sw_drift(30, 4, crop = "Obstbau spät", distances = c(3, 20, 50)), 3), c('3 m' = 1.101, '20 m' = 0.080, '50 m' = 0.013))
+})
diff --git a/pkg/tests/testthat/test_SFO_actual_twa.R b/pkg/tests/testthat/test_SFO_actual_twa.R
new file mode 100644
index 0000000..b0a5537
--- /dev/null
+++ b/pkg/tests/testthat/test_SFO_actual_twa.R
@@ -0,0 +1,13 @@
+library(pfm)
+context("Actual and time weighted average concentrations for SFO kinetics")
+
+test_that("SFO_actual_twa calculates correctly", {
+  test_times <- c(0, 1, 7, 21, 42)
+  # This was calculated with the CRD spreadsheet for multiple applications
+  reference <- data.frame(
+    actual = c(10, 9.330, 6.156, 2.333, 0.544),
+    twa = c(NaN, 9.661, 7.923, 5.267, 3.248),
+    row.names = test_times)
+  result <- round(10 * SFO_actual_twa(10, times = test_times), 3)
+  expect_equal(result, reference)
+})
diff --git a/pkg/tests/testthat/test_UK_drainage.R b/pkg/tests/testthat/test_UK_drainage.R
new file mode 100644
index 0000000..3a57db8
--- /dev/null
+++ b/pkg/tests/testthat/test_UK_drainage.R
@@ -0,0 +1,33 @@
+library(pfm)
+context("UK drainage PEC calculations")
+
+test_that("The mobility classification and the drained percentage are correct", {
+  # Expected results are from the CRD drainage calculator, retrieved 2015-06-11
+  
+  expect_equivalent(SSLRC_mobility_classification(1), list("Very mobile", 1.9))
+  expect_equivalent(SSLRC_mobility_classification(15), list("Mobile", 1.9))
+  expect_equivalent(SSLRC_mobility_classification(30), list("Mobile", 1.9))
+  expect_equivalent(SSLRC_mobility_classification(74.9), list("Mobile", 1.9))
+  expect_equivalent(SSLRC_mobility_classification(75), list("Moderately mobile", 0.7))
+  expect_equivalent(SSLRC_mobility_classification(100), list("Moderately mobile", 0.7))
+  expect_equivalent(SSLRC_mobility_classification(800), list("Slightly mobile", 0.5))
+  expect_equivalent(SSLRC_mobility_classification(2000), list("Slightly mobile", 0.02))
+  expect_equivalent(SSLRC_mobility_classification(5000), list("Non mobile", 0.01))
+})
+
+test_that("UK drainflow PECs are correct", {
+  # Expected results are from the CRD drainage calculator, retrieved 2015-06-11, except
+  # for the third example from the data requirements handbook
+
+  # This is the first example calculation from the data requirements handbook, where they give
+  # 8.07 µg/L as the result (obviously a rounding error).
+  expect_equal(round(PEC_sw_drainage_UK_ini(150, interception = 0, Koc = 100), 4), 8.0769)
+
+  # This is the second example calculation from the data requirements handbook
+  expect_equal(round(PEC_sw_drainage_UK_ini(90, interception = 0, Koc = 10), 4), 13.1538)
+
+  # This is the third example calculation from the data requirements handbook, 
+  expect_equal(round(PEC_sw_drainage_UK_ini(60, interception = 0.5, Koc = 550,
+                                            latest_application = "01 July",
+                                            soil_DT50 = 200), 2), 0.84)
+})