diff options
| -rw-r--r-- | README.md | 6 | ||||
| -rw-r--r-- | docs/index.html | 8 | ||||
| -rw-r--r-- | docs/reference/PELMO_runs.html | 2 | ||||
| -rw-r--r-- | inst/staticdocs/index.r | 42 |
4 files changed, 8 insertions, 50 deletions
@@ -33,13 +33,13 @@ install_github("jranke/pfm", quick = TRUE) ## Use -Please refer to the [reference](http://jranke.github.io/pfm/reference/index.html). +Please refer to the [reference](http://pkgdown.jrwb.de/pfm/reference/index.html). ## Examples One recent nice example of the usage of this package is the visualisation of a time weighted average for a sawtooth curve obtained from several overlays -of mkinfit predictions as shown [here](http://jranke.github.io/pfm/reference/plot.one_box.html). +of mkinfit predictions as shown [here](http://pkgdown.jrwb.de/pfm/reference/plot.one_box.html). Another, even more recent example shows how FOCUS PELMO can be run in parallel under Linux -as shown [here](http://jranke.github.io/pfm/reference/PELMO_runs.html). +as shown [here](http://pkgdown.jrwb.de/pfm/reference/PELMO_runs.html). diff --git a/docs/index.html b/docs/index.html index 0c53fe9..0a45d75 100644 --- a/docs/index.html +++ b/docs/index.html @@ -64,18 +64,18 @@ this program. If not, see <http:<span class="er">//</span>www.gnu.org/license <a href="#installation" class="anchor"> </a>Installation</h2> <p>You can install the package from <a href="http://github.com/jranke/pfm">github</a>, e.g. using the <code>devtools</code> package. Using <code>quick = TRUE</code> skips docs, multiple-architecture builds, demos, and vignettes, to make installation as fast and painless as possible.</p> <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">library</span>(devtools) -<span class="kw">install_github</span>(<span class="st">"jranke/pfm"</span>, <span class="dt">subdir =</span> <span class="st">"pkg"</span>, <span class="dt">quick =</span> <span class="ot">TRUE</span>)</code></pre></div> +<span class="kw">install_github</span>(<span class="st">"jranke/pfm"</span>, <span class="dt">quick =</span> <span class="ot">TRUE</span>)</code></pre></div> </div> <div id="use" class="section level2"> <h2 class="hasAnchor"> <a href="#use" class="anchor"> </a>Use</h2> -<p>Please refer to the <a href="http://jranke.github.io/pfm/reference/index.html">reference</a>.</p> +<p>Please refer to the <a href="http://pkgdown.jrwb.de/pfm/reference/index.html">reference</a>.</p> </div> <div id="examples" class="section level2"> <h2 class="hasAnchor"> <a href="#examples" class="anchor"> </a>Examples</h2> -<p>One recent nice example of the usage of this package is the visualisation of a time weighted average for a sawtooth curve obtained from several overlays of mkinfit predictions as shown <a href="http://jranke.github.io/pfm/reference/plot.one_box.html">here</a>.</p> -<p>Another, even more recent example shows how FOCUS PELMO can be run in parallel under Linux as shown <a href="http://jranke.github.io/pfm/reference/PELMO_runs.html">here</a>.</p> +<p>One recent nice example of the usage of this package is the visualisation of a time weighted average for a sawtooth curve obtained from several overlays of mkinfit predictions as shown <a href="http://pkgdown.jrwb.de/pfm/reference/plot.one_box.html">here</a>.</p> +<p>Another, even more recent example shows how FOCUS PELMO can be run in parallel under Linux as shown <a href="http://pkgdown.jrwb.de/pfm/reference/PELMO_runs.html">here</a>.</p> </div> </div> </div> diff --git a/docs/reference/PELMO_runs.html b/docs/reference/PELMO_runs.html index 23a7a30..4b7f7fb 100644 --- a/docs/reference/PELMO_runs.html +++ b/docs/reference/PELMO_runs.html @@ -171,7 +171,7 @@ the period.plm file generated by the FOCUS PELMO GUI.</p> #> #> </div><div class='input'><span class='co'># We get exactly the same PECgw values (on Linux, calling PELMO using Wine).</span> <span class='fu'>print</span>(<span class='no'>time_1</span>)</div><div class='output co'>#> User System verstrichen -#> 228.532 0.540 57.195 </div><div class='input'> +#> 229.448 0.524 57.021 </div><div class='input'> <span class='co'># Demonstrate some results with metabolites.</span> <span class='no'>runs_2</span> <span class='kw'><-</span> <span class='fu'>list</span>(<span class='fu'>list</span>(<span class='kw'>psm</span> <span class='kw'>=</span> <span class='st'>'Pesticide_D_1_May_every_other_year_mets'</span>, <span class='kw'>win</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='st'>"Cha"</span>, <span class='st'>"Ham"</span>, <span class='st'>"Kre"</span>))) diff --git a/inst/staticdocs/index.r b/inst/staticdocs/index.r deleted file mode 100644 index 421071c..0000000 --- a/inst/staticdocs/index.r +++ /dev/null @@ -1,42 +0,0 @@ -sd_section( - "Degradation", - "Functions related to degradation", - c("pfm_degradation", "SFO_actual_twa") -) -sd_section( - "Mobility", - "Indicators related to mobility", - c("GUS", "SSLRC_mobility_classification") -) -sd_section( - "Soil", - "Predicted environmental concentrations in soil", - c("PEC_soil", "soil_scenario_data_EFSA_2015") -) -sd_section( - "Surface water", - "Predicted environmental concentrations in surface water", - c( - "PEC_sw_drift", "PEC_sw_sed", - "drift_data_JKI", - "PEC_sw_drainage_UK", - "TOXSWA_cwa", - "read.TOXSWA_cwa", - "plot.TOXSWA_cwa" - ) -) -sd_section( - "Groundwater", - "Predicted environmental concentrations in groundwater", - c("FOCUS_GW_scenarios_2012") -) -sd_section( - "Chemical entities", - "Work with input stored in chemical entites as R objects using the chent package", - c("endpoint") -) -sd_section( - "General", - "Utilities that are generally useful", - c("geomean") -) |