Move static docs to pkdown.jrwb.de, update them

4 files changed, 8 insertions, 50 deletions

diff --git a/README.md b/README.md
index a0de830..b4b2caa 100644
--- a/README.md
+++ b/README.md
@@ -33,13 +33,13 @@ install_github("jranke/pfm", quick = TRUE)
 
 ## Use
 
-Please refer to the [reference](http://jranke.github.io/pfm/reference/index.html).
+Please refer to the [reference](http://pkgdown.jrwb.de/pfm/reference/index.html).
 
 ## Examples
 
 One recent nice example of the usage of this package is the visualisation
 of a time weighted average for a sawtooth curve obtained from several overlays
-of mkinfit predictions as shown [here](http://jranke.github.io/pfm/reference/plot.one_box.html).
+of mkinfit predictions as shown [here](http://pkgdown.jrwb.de/pfm/reference/plot.one_box.html).
 
 Another, even more recent example shows how FOCUS PELMO can be run in parallel under Linux
-as shown [here](http://jranke.github.io/pfm/reference/PELMO_runs.html).
+as shown [here](http://pkgdown.jrwb.de/pfm/reference/PELMO_runs.html).
diff --git a/docs/index.html b/docs/index.html
index 0c53fe9..0a45d75 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -64,18 +64,18 @@ this program. If not, see &lt;http:<span class="er">//</span>www.gnu.org/license
 <a href="#installation" class="anchor"> </a>Installation</h2>
 <p>You can install the package from <a href="http://github.com/jranke/pfm">github</a>, e.g. using the <code>devtools</code> package. Using <code>quick = TRUE</code> skips docs, multiple-architecture builds, demos, and vignettes, to make installation as fast and painless as possible.</p>
 <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">library</span>(devtools)
-<span class="kw">install_github</span>(<span class="st">"jranke/pfm"</span>, <span class="dt">subdir =</span> <span class="st">"pkg"</span>, <span class="dt">quick =</span> <span class="ot">TRUE</span>)</code></pre></div>
+<span class="kw">install_github</span>(<span class="st">"jranke/pfm"</span>, <span class="dt">quick =</span> <span class="ot">TRUE</span>)</code></pre></div>
 </div>
 <div id="use" class="section level2">
 <h2 class="hasAnchor">
 <a href="#use" class="anchor"> </a>Use</h2>
-<p>Please refer to the <a href="http://jranke.github.io/pfm/reference/index.html">reference</a>.</p>
+<p>Please refer to the <a href="http://pkgdown.jrwb.de/pfm/reference/index.html">reference</a>.</p>
 </div>
 <div id="examples" class="section level2">
 <h2 class="hasAnchor">
 <a href="#examples" class="anchor"> </a>Examples</h2>
-<p>One recent nice example of the usage of this package is the visualisation of a time weighted average for a sawtooth curve obtained from several overlays of mkinfit predictions as shown <a href="http://jranke.github.io/pfm/reference/plot.one_box.html">here</a>.</p>
-<p>Another, even more recent example shows how FOCUS PELMO can be run in parallel under Linux as shown <a href="http://jranke.github.io/pfm/reference/PELMO_runs.html">here</a>.</p>
+<p>One recent nice example of the usage of this package is the visualisation of a time weighted average for a sawtooth curve obtained from several overlays of mkinfit predictions as shown <a href="http://pkgdown.jrwb.de/pfm/reference/plot.one_box.html">here</a>.</p>
+<p>Another, even more recent example shows how FOCUS PELMO can be run in parallel under Linux as shown <a href="http://pkgdown.jrwb.de/pfm/reference/PELMO_runs.html">here</a>.</p>
 </div>
 </div>
   </div>
diff --git a/docs/reference/PELMO_runs.html b/docs/reference/PELMO_runs.html
index 23a7a30..4b7f7fb 100644
--- a/docs/reference/PELMO_runs.html
+++ b/docs/reference/PELMO_runs.html
@@ -171,7 +171,7 @@ the period.plm file generated by the FOCUS PELMO GUI.</p>
 #&gt; 
 #&gt; </div><div class='input'><span class='co'># We get exactly the same PECgw values (on Linux, calling PELMO using Wine).</span>
 <span class='fu'>print</span>(<span class='no'>time_1</span>)</div><div class='output co'>#&gt;        User      System verstrichen 
-#&gt;     228.532       0.540      57.195 </div><div class='input'>
+#&gt;     229.448       0.524      57.021 </div><div class='input'>
 <span class='co'># Demonstrate some results with metabolites.</span>
 <span class='no'>runs_2</span> <span class='kw'>&lt;-</span> <span class='fu'>list</span>(<span class='fu'>list</span>(<span class='kw'>psm</span> <span class='kw'>=</span> <span class='st'>'Pesticide_D_1_May_every_other_year_mets'</span>,
                     <span class='kw'>win</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='st'>"Cha"</span>, <span class='st'>"Ham"</span>, <span class='st'>"Kre"</span>)))
diff --git a/inst/staticdocs/index.r b/inst/staticdocs/index.r
deleted file mode 100644
index 421071c..0000000
--- a/inst/staticdocs/index.r
+++ /dev/null
@@ -1,42 +0,0 @@
-sd_section(
-  "Degradation",
-  "Functions related to degradation",
-  c("pfm_degradation", "SFO_actual_twa")
-)
-sd_section(
-  "Mobility",
-  "Indicators related to mobility",
-  c("GUS", "SSLRC_mobility_classification")
-)
-sd_section(
-  "Soil",
-  "Predicted environmental concentrations in soil",
-  c("PEC_soil", "soil_scenario_data_EFSA_2015")
-)
-sd_section(
-  "Surface water",
-  "Predicted environmental concentrations in surface water",
-  c(
-    "PEC_sw_drift", "PEC_sw_sed",
-    "drift_data_JKI",
-    "PEC_sw_drainage_UK", 
-    "TOXSWA_cwa",
-    "read.TOXSWA_cwa", 
-    "plot.TOXSWA_cwa"
-    )
-)
-sd_section(
-  "Groundwater",
-  "Predicted environmental concentrations in groundwater",
-  c("FOCUS_GW_scenarios_2012")
-)
-sd_section(
-  "Chemical entities",
-  "Work with input stored in chemical entites as R objects using the chent package",
-  c("endpoint")
-)
-sd_section(
-  "General",
-  "Utilities that are generally useful",
-  c("geomean")
-)