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diff --git a/ChangeLog b/ChangeLog deleted file mode 100644 index 0ad0374..0000000 --- a/ChangeLog +++ /dev/null @@ -1,1561 +0,0 @@ -commit df4034c64aa3590c3911dca88b066332dc8e4df1 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2022-11-11 14:35:37 +0100 - - Simplify travis config - -commit f4e22fc28fa0b05b05c8a1277333777635802e86 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2022-11-11 13:46:24 +0100 - - Try to simplify drat configuration - -commit 6bc40dbd4e7c76179009a501ae168f0fa73f2be2 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2022-11-11 12:12:09 +0100 - - Disable bspm to make install from drat work - -commit 96b6f8954d4eb9ec5b8ee9209074d21fdd67f966 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2022-11-11 12:04:15 +0100 - - Fix last commit - -commit c9e9f1312e7b73c8596d2d01324fcb67c000f3e9 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2022-11-11 12:00:39 +0100 - - Install drat to use it... - -commit b0a7a94ac0a7070e8612e443b4aa485beb07b85d -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2022-11-11 11:57:20 +0100 - - Another attempt to make drat work on travis - -commit 854cc695a1f64a9b37957fdcd81c1ce23a6a2d69 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2022-11-11 11:52:53 +0100 - - Try to make drat work - -commit c463f9fb197f70f97831b3648bc398be8ff9ae7d -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2022-11-11 11:41:40 +0100 - - mkin was not pulled from the drat repo - -commit f3ba961b6be63d3995cccea2968d7b2fb907ca16 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2022-11-11 11:35:27 +0100 - - Use drat instead of install_github - -commit 510416bc07eb7b3197c20d687f6c51a032cfbfec -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2022-11-11 11:12:59 +0100 - - Forgot to commit .travis.yml ... - -commit f21a53421dc481604c681c2be8438c8a8b5db23d -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2022-11-11 10:58:46 +0100 - - mkin and chents from github for check on travis - -commit e63dbdf1fdae0abc7246f721357504798309033d -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2022-11-11 10:52:07 +0100 - - Don't force suggested packages - -commit 60a217ecc9a035ab956bd4229da6ad4c654e7d6e -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2022-11-11 10:37:13 +0100 - - Remove Remotes: field from DESCRIPTION - - It causes trouble with remotes::install_deps() on travis, see the - various previous build logs. - -commit 3ef243d18b7972eb8cb4a561ac07d93b46df13a5 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2022-11-11 10:06:39 +0100 - - Fix call to download.file for debugging - -commit 9f977cb5d9657d0066598cda38908282dadae0c4 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2022-11-11 10:02:57 +0100 - - Try to debug the failure in remotes::install_deps - -commit 6681356b8abab27f0735341ed6d3a44e1374e2e5 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2022-11-11 09:00:41 +0100 - - Typo, remove PELMO related suggestions - - PELMO related functions are not used in pfm, so apart from advertising, - these suggestions did not do anything. - -commit 3e82035d2753d031401f80833de8939740491bd0 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2022-11-10 17:17:03 +0100 - - Revert standalone option for remotes on travis - -commit 9f28f36b00c156ff9c78790302c6fc74e0195651 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2022-11-10 16:48:27 +0100 - - Yet another attempt on remotes on travis - -commit 4f315619d56a191a80d2223913ee976d96ae5f97 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2022-11-10 16:43:39 +0100 - - Another attempt to make remotes work on travis - -commit 8d03f6ae52e6c45e3da93e41b15eb5f853ab6d17 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2022-11-10 16:35:33 +0100 - - Try to make remotes work - -commit e46ee27b218dde8ebb948e8b3b28e9cd8250bc70 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2022-11-10 16:27:12 +0100 - - Skip BSPM, it's the default - -commit f41d1759b890613895879f36e69e9928dd517f0e -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2022-11-10 15:49:36 +0100 - - Only install dependencies, as chents fails to install - -commit 7a54d9b65fc55e28411126b97c542fb4c180c0a7 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2022-11-10 15:43:43 +0100 - - Use Dirks run.sh on travis - -commit a0364c2561dda4c4b67e7e3b6830719b4ed60916 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2022-11-10 12:17:34 +0100 - - set_nd_nq is now in mkin, fix Steps12 bug - - If a scenario with a slash "/" was selected in PEC_sw_focus(), - the Step 2 file generated giving an error (path not found) in the - Steps12 calculator, because the scenario name is part of the "compound" - name in this implementation, in order to show it in the list that the - calculator presents. - -commit aa0c59c7a3ede267730fe85f9e27b1814f9e897a -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2021-11-19 00:18:41 +0100 - - Update static docs - -commit f4e35b0bf9c4de0b5c6235f5cf9e284faf40569f -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2021-11-19 00:17:33 +0100 - - Update docs and logs - -commit 6e3917d814500d5af43702b4d4be1e44cefc00d4 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2021-11-18 11:22:44 +0100 - - Update README after changing default branch to main - -commit e0029129aec8b92d58aea8552006002c5fe409f5 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2021-02-10 09:29:33 +0100 - - Treat Kfoc = 0 like Exposit in runoff calcs - -commit c97a4f5a9fe30ffc3321681a97eea167cfc427b5 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2020-07-23 12:22:25 +0200 - - PEC_sw_drift: Rautmann formula (1 app, Ackerbau) - - This makes it possible to calculate drift PECsw for other distances than - present in the JKI data or the Rautmann paper. - -commit 90fa42c86596c85168931148bf8d5fa014fa7794 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2020-07-23 10:51:39 +0200 - - Update docs, use R6 support of roxygen - -commit df70d80d9ef13b69e58de6f47b9041b6a021025e -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2020-07-21 15:50:21 +0200 - - Clean test.log after testing - -commit 512cd50874b060d50a14d28df88018ac144cf6d3 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2020-07-07 12:36:56 +0200 - - Remove copyright headers, update TOXSWA_cwa test - - - The window column of the windows component of a TOXSWA_cwa object is not - a factor any more, but a character vector. - - testthat::expect_equal_to_reference is replaced by - testthat::expect_known_output, so we can have git diff show what has - changed - -commit 58c6214f459b28b899794f32a60836aef97ac01b -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2020-07-07 11:27:44 +0200 - - Adapt pfm_degradation to current mkin - - use_of_ff = "max" is now the default - -commit e3bc264df69f892e9ad990be22d3ec1b22041daa -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2020-06-17 13:37:59 +0200 - - TSCF estimation equations, update docs - - Briggs et al. (1982) and Dettenmaier et al. (2009) - -commit e505ecc4aba0f6719fd772faa2655dd824a6930d -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2020-04-17 09:51:33 +0200 - - Skip testing on R-devel - - it currently fails with - - ✖ | 6 1 | Read and analyse TOXSWA cwa files [6.4 s] - ──────────────────────────────────────────────────────────────────────────────────────────────────── - test_TOXSWA.R:68: failure: Getting events and moving window analysis works - H_sw_R1_stream$windows has changed from known value recorded in 'H_sw_R1_stream_windows.rds'. - Component "window": Modes: character, numeric - Component "window": Attributes: < target is NULL, current is list > - Component "window": target is character, current is factor - -commit d81550d0cccae824cc748de48e7fd50ea8d8033a -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2020-04-16 18:02:18 +0200 - - Make na.rm = FALSE the default for geomean() - - This makes more sense and is in line with mean() from base R. Adapt - tests and update docs. - -commit 4bc95b3e4aae22e4052e0a4c905a9227c909e2cd -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2020-02-19 07:49:08 +0100 - - Check in last build log - -commit 00e177fdf6929058fd26c3086ae159462ae0a456 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-10-23 16:18:24 +0200 - - Fix static docs for set_nd_nq - -commit a23fdf1152744341bd73f22f9b86951987125e6d -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-10-23 16:15:38 +0200 - - Updated ChangeLog and DESCRIPTION - -commit 020bce41dd821b5949f824eaa3a2998584a14585 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-10-15 11:27:59 +0200 - - Residue processing for depth profiles over time - -commit a2ca8be6f5593f0afd833ea73b62149055ee84f9 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-10-10 14:56:35 +0200 - - Do not mess with zero values at time zero - -commit a071d46f698397a6c8247e19eceb0fcd5f139056 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-10-10 12:25:42 +0200 - - Fix set_nd for metabolites, handle zero at time zero - -commit a5503d3e26408f7308a7bf4da617205b93d17422 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-10-10 09:21:46 +0200 - - Fix documentation for set_nd - -commit a5e458ecb33ae87e46b2237174a194f6252a97cf -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-10-10 08:53:30 +0200 - - Finish documentation of set_nd and test it - -commit 63df3871a442de4bf47e4d9de1449e7f6ed65b2f -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-10-09 19:17:07 +0200 - - Function to set non-detects in residue series - -commit 9f848a9518aabf162723271bafba244221ee83ed -Author: Johannes Ranke <johannes.ranke@jrwb.de> -Date: 2019-09-27 12:55:03 +0200 - - Built windows binary for drat - -commit 435e07a6f7fd2599d783fd306ee6d9e08acc0c6b -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-09-27 10:00:15 +0200 - - Fix for UK drainage, some EFSA interception and washoff - - - PEC_sw_drainage_UK() gave results that were a little bit too high - for the substances with the highest Koc (>4000), as I used 0.01% instead - of 0.008% for them. This must have come from an old vesion of the UK - data requirements handbook, at least I do not have another explanation - - - Add EFSA interception (from 2014 DegT50 guidance) and tier 1 - crop wash-off factors (from 2017 PEC soil guidance) for some major - arable crops - - - Update docs - -commit 803fe13e505960fddccdbd4dcb524715f5eb068d -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-09-18 18:18:40 +0200 - - Add url: tag to _pkgdown.yml, typo, update docs - -commit 8deaa29a659630a40e8b11df1fa3ebbbd9ca9e68 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-07-01 08:04:40 +0200 - - Typo - -commit 37a1513d73201dbacc71af3c33a2a2a4e798583c -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-06-12 18:15:46 +0200 - - Update of static docs - -commit 5c9dd5c269acc4a6e6e32a7e599afb8f98d8ca36 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-06-12 18:14:46 +0200 - - Documentation fix - -commit 069824057caf8e57507852b858a7ecfd8e13e49a -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-05-14 12:41:16 +0200 - - Version bump and doc update - -commit 41f3c867008c24b69a9bb0e5c7c084969d46bebd -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-05-14 12:33:21 +0200 - - Add Exposit version 3.01a2 for runoff calculations - - At the request of Muris Korkaric (Agroscope). This is for 3 m buffer - only and provides consistency with earlier calculations - -commit 7b11b5d0da29447df026002af3ae5283510fdae9 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-04-29 13:03:00 +0200 - - Additional runoff data used by Agroscope - -commit 67cd9e04caaf18a40231262c9033fb24e8bb2a66 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-04-26 13:45:44 +0200 - - Formatting improvement for the online docs - -commit 45f540ef19fd2a2a80e3f3f72950933ed6396f0c -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-04-26 13:33:27 +0200 - - Another take on completing the drift data - - The R script I used yesterday got lost because I used the .Rd file - that got overwritten by roxygen later. - -commit 451b332c8888bac8279340b086abb3b714ac3ae1 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-04-25 11:50:35 +0200 - - Add more drift data, especially 3 m field crop data - - To support Agroscope in doing lots of PEC calculations for Switzerland - -commit 3bb842b93107dd6207610de1fe5b44be66779e4d -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-04-25 10:25:56 +0200 - - Remove leftover docs from earlier version - - Docs now live in docs/ - -commit 77f63efa62b6530fbe2accdacc866e34626fe4e3 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-02-21 16:01:38 +0100 - - Update docs - -commit 5086e2b87eaec90a02b4744d1321c6949d0b8982 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-02-21 15:59:22 +0100 - - Use codecov - -commit e21ec96873bf60072414369bc96e4c076a450235 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-02-19 17:13:55 +0100 - - Add grImport to Suggests: - - Because chent which in turn suggests grImport is loaded from github - which obviously does not pull grImport - -commit 4e99ae029638a3720eba97b28bd7de3129a727ce -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-02-19 15:22:26 +0100 - - Update README.html - -commit 31eca93dadf58d47b3f3dd7aa485f89023090440 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-02-19 14:54:26 +0100 - - Add Remotes: field for travis - -commit 70b85fd2a11da1e20cd4978c717540021af34be8 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-02-19 14:35:15 +0100 - - Test on Travis - -commit 17755babc3a517f4c7cec1c04e3e1f32b7ffb5d9 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-02-19 14:27:03 +0100 - - Add another test for Exposit drainage - - to test overriding the mobility group derived from Koc - -commit 138638976f792684483520fe7837ded0a27938e4 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-02-19 12:35:19 +0100 - - Stop endless appending to pesticide.txt example - -commit 72c56f4246966c1bea627f601cf3cc457734f023 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-02-19 12:27:00 +0100 - - Add German drainage calculations using Exposit 3.02 - -commit e5a077e28153f6494c99d6945b8b1bd239464609 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-02-08 15:25:19 +0100 - - Make SSLRC and PEC drainage UK accept NA for Koc - -commit b935273d651301b271e0cb66bf36c2bbc1d15b32 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-01-31 01:40:24 +0100 - - Separate out PELMO utilities into rPELMO - -commit 1611dd58df6b2b2e6ad01af6573664da8ce8b6b9 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2019-01-30 23:58:55 +0100 - - Convenience function for metabolite PEC soil - -commit eab95c62479d732cbd531ad67ea458d2744af420 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2018-09-27 18:58:32 +0200 - - Create valid Step 1 files with fewer arguments - -commit 8452daa2015aa645dcc1eca3ec2bba5726603e4e -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2018-09-22 09:54:59 +0200 - - Add test and update docs - -commit ff7e67a4d3415419dd3f712ef1af7467ebf65508 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2018-09-21 19:39:44 +0200 - - Support FOMC in PEC_soil - -commit 03c3035ca01c66b6a1352f7e509753fe2d057af2 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2018-07-11 03:41:43 +0200 - - Improve PELMO tests - -commit 22b36c824fe5e1561868a649216fe079c6fbfb85 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2018-07-10 18:06:29 +0200 - - Update static docs - -commit cb3695dd434b3a3273217fb22c5ffb86065ae96d -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2018-07-10 17:57:33 +0200 - - EFSA PEC soil guidance from 2017 - - - Implement the new guidance as well as possible - - Maintenance work addressing CRAN checks - -commit c4c3ca282c6aadca82e392692ae4100fec1dd834 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2018-07-10 16:46:47 +0200 - - .out file from TOXSWA 5.5.3 for testing - -commit a736ecc357889107b6e93f14cdf0c1ea4587817f -Author: Johannes Ranke <johannes.ranke@jrwb.de> -Date: 2018-07-10 16:08:52 +0200 - - Adapt path to package on windows - -commit 8989a484b9b2d23463c95e0a3927e307ec0a5e64 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2018-07-04 10:59:47 +0200 - - Some documentation updates - - Document that TOXSWA 5.5.3 is supported in the help files - -commit 6ca8bdb8636141fac592688a6794ae092f0bc85a -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2018-06-20 14:58:44 +0200 - - Advertise drat repo - -commit 6acfd0dfb2670e3eeab6144c90586f28105583a8 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2018-06-20 14:53:02 +0200 - - Update static docs - -commit cac29c8c1cc0f6004ef0cd63229cfb993a24496c -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2018-06-11 16:27:22 +0200 - - Adapt to TOXSWA 5.5.3 - -commit bd15236d5dedb4067bd29e58e655c5352aca1db4 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2018-06-08 16:20:40 +0200 - - Enable PEC porewater for the default scenario - - The default scenario uses soil parameters from the REACH guidance R.16, - Table R.16-9. - -commit ec2052d68950745380c2724757b3ba8b116605fc -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2018-06-08 14:54:40 +0200 - - Add actual/twa calcs for FOMC, typo - -commit edc3462fb4fa9f0eb604fc18ec62bb48997b5627 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2018-06-08 14:53:58 +0200 - - Pending stuff from the doc update - -commit 197606de234a936751ac3c1db2e4feb3fa117a92 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2018-06-06 02:48:44 +0200 - - Rebuild docs with pkgdown 1.1.0 - -commit 282820693c62b958e12104f4bb6229c04803f098 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2018-03-01 10:32:08 +0100 - - Add a README.html for cgit.jrwb.de - -commit 6d8de73e68f2c0349e618af35ce4a8f095ca0ed5 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2018-03-01 10:10:08 +0100 - - Rebuild static docs using current pkdown - - Process PELMO runs in example using 15 (hyperthreading) cores and show - processor info. - -commit ffeec05d913f2e987da362c05df2afc2a8a23965 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2018-01-29 10:11:27 +0100 - - Documentation fixes and updates - -commit 8423df9693c5cd2f2d36ee3131c7b6fcefa4d0ca -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2018-01-29 10:11:27 +0100 - - Documentation fixes and updates - -commit b9ce44748f2795ae1f35fe5a510e88635f247a7f -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2018-01-29 09:22:42 +0100 - - Correction of return value documentation for PEC_sw_exposit_runoff - - Rebuild pkgdown documentation - -commit 87d63e649da5e12409c50cb06d3d2a01e9880759 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-12-15 17:25:21 +0100 - - Improve handling of µ in y axis for plot.TOXSWA_cwa - -commit 4944d7ade227f1dd54c94b6a02c3c849dc1fb8ab -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-12-14 10:19:43 +0100 - - Update copyright date - -commit 0e1d517d4d6351f2d43ab8636363e73d8b8cf677 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-11-04 11:48:08 +0100 - - Option to thin low TOXSWA PECsw data for plotting - - to reduce the file size of plots e.g. as PDF files - -commit eb4465035dd44907eae3ea0340221316b7cfca12 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-11-03 11:18:10 +0100 - - Also return runoff percentages - -commit 06b528f0c19ca9f7a311612c0e9ae80c0d0c1d3f -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-10-27 18:15:29 +0200 - - Exposit runoff calculations for surface water - -commit 2cd464455a22791c0450ada45a0e0128c637fade -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-10-23 15:19:03 +0200 - - Typos, rebuild static docs - -commit 6f6575701d9b028af4b3b1b4b61c36d4989e2812 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-10-10 14:03:20 +0200 - - Add ORCID - -commit a33f1bbbf6f6121e8ad40284690a463733a00bc2 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-10-09 08:48:39 +0200 - - Write Step 2 input files on windows - -commit 311c4fbcc51ad727551da41569d64e6bc290c2b2 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-10-06 09:30:21 +0200 - - Update docs, small bugfix - -commit 72d7358581bca88af8c507b6c80791100aaafafc -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-08-24 10:30:11 +0200 - - Build for windows using roxygen from master - - Now that roxygen can handle UTF8 characters in function - arguments thanks to Hadley Wickham and Jim Hester - -commit a8a2a9d57f40ec7a4fc70df3dc470d88cd10c525 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-07-24 16:31:07 +0200 - - Improve Makefile - -commit 89fc0926722fbfd6420297194c8b18f5b8a9447d -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-07-24 16:26:51 +0200 - - Version bump as I had 0.4.3 in my drat already - -commit 762880a78620e50814351248c02d012a7b030fb8 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-07-24 16:23:22 +0200 - - Avoid warning about possibly mis-spelled word - -commit a2e24495c01f837474b69263a9861a89050cbfd1 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-07-21 11:15:41 +0200 - - New Option for Step 1, fix example, update docs - - Also add the reference file for testing Step12 input file generation - -commit dffa31a5ad5026d4d67327da622f45c00be40584 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-06-22 08:23:13 +0200 - - Add scenario, region and season to run name - -commit 0607a619d92d582ba40f9c0c3b32a1d0a8791655 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-06-20 16:40:21 +0200 - - Possibility to turn off formation in water - - This makes it possible to compare the Step 1 output with earlier - versions of the Steps 12 tool. - -commit 0d60c88ba7e0693a832056ea3db5cc0eaf3b0819 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-06-20 14:16:14 +0200 - - Fix line endings and allow all interception classes - -commit dc1e49c8bb27cac81268719055bc4336843c0506 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-06-20 06:16:19 +0200 - - Keep dos format for pesticide.txt test data - -commit fd40f74907e89077bd81af5d779ae93e1434d8c6 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-06-20 06:11:12 +0200 - - Now the errors in PELMO output are gone - not reproducible - -commit 88044fd98c5b95d3f3f9bbef7416af66552189c1 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-06-20 06:04:14 +0200 - - Tests for Step 1 and 2 (input file only) pass, PELMO fails - - There are spurious errors in the output PELMO generates. Two examples - are in the test.log - -commit 34d4915297faf6236479f0e6474f8aa6b8d4b416 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-06-20 04:30:52 +0200 - - Fix generation of input files - - - Write header only if not appending - - Write max_soil and max_ws for metabolites - - Formatting - -commit 7233eed00b799e08c31ae971f997b4b3c14eaea2 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-06-19 20:10:21 +0200 - - Single line of generated Step12 input file partially validated - -commit c9bcd8e68db61515080ff377c6a04fa807337258 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-06-17 16:36:13 +0200 - - Start with the generation of an input file - -commit e6f968cf97ed6ca9268e6098d86ba63ff2c6d2b0 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-05-24 16:07:35 +0200 - - Fix for the sawtooth function for repeated applications - - For n > 2, the second application was made at 2 * i instead of i. - -commit 4835e20d1d08203657ab616600286ad9dfd71344 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-05-24 15:46:44 +0200 - - Re-enable PELMO examples and tests - - - Add .gitattributes to make sure CRLF line endings are kept for PELMO - .psm files - - Update static docs - -commit 539ea37b45ddc41b36dd199f06ffe5936ab13f21 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-05-17 12:23:38 +0200 - - Documentation fix - -commit 62bffd4873bc53fa9cd81336efa716b220c83e0a -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-05-17 09:36:22 +0200 - - Simplify tests where possible - -commit d60bb9c0b52c8e0452bfbe507e60d5f651589cc8 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-05-16 18:57:16 +0200 - - Update static documentation - -commit 14fa47b1ea1651fc2cb7bbf0086741a8004d35ee -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-05-16 18:54:34 +0200 - - Remove external data also from git as their licence is unclear - -commit 608c4f89a2656f67ba915aab17633d41acc789a7 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-05-16 18:44:22 +0200 - - Add build and test logs to the git repo - -commit 3e26a8ab76a434c3465ea1db1b4a2a2ff3ea8ec8 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-05-16 18:40:25 +0200 - - Add TWA concentrations for days > 1, fix link - - Now we have seven test calculations for the Step 1 calculator, all - perfectly passing. This provides confidence that this is a - correct reimplementation of the Step 1 part of the Step 1/2 calculator. - -commit 36036b5901223591e7e21e8b73d8cd1fb034f4cb -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-05-16 15:43:50 +0200 - - Finish the Step 1 calculator including tests - - Some cleaning up. PELMO facilities do not currently work at my end, - as I have no working wine installation on this computer - -commit d042f8f06b313e8595087587455daac73d84f17b -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-05-15 20:01:28 +0200 - - Start of an Steps 1/2 calculator in R - -commit b052bf8d1e090e07bf0853f0aa8b895db8f41a2a -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-03-29 19:24:37 +0200 - - Make it possible to use expressions in axis labels - -commit d69fda8d8f854b735394ecdaec9d59fb18c42b00 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-03-28 10:09:45 +0200 - - Update Changelog - -commit 90e5ff0a9fdadd65e179c04c7d43b4db6e301984 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-03-06 17:59:16 +0100 - - Move static docs to pkdown.jrwb.de, update them - -commit 68e36eb0a5f1b611588d47f77e0ef7c3d9ba0beb -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-03-01 11:37:31 +0100 - - The package is not in subdir `pkg` any more - -commit f67ea0c4aeb68631e9f93c95e86c14364718477a -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-31 07:33:21 +0100 - - Small documentation fix - -commit 4e696997516543e29119e94d67283f513be4484d -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-30 18:08:50 +0100 - - Regenerate static documentation - -commit 03bda75d343402dad99df2aad55611e11279b833 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-30 18:04:53 +0100 - - Correct psm file in the example with metabolites - -commit 39d202b0a0f833c756bc98fb4961483de1b15353 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-30 16:14:15 +0100 - - Ignore windows binary builds in git and in R package - -commit e6bb9654679f43af6958d6e28cb5206abb91d574 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-30 16:10:30 +0100 - - Test reproducing the FOCUS Summary information - - generated from the FOCUS PELMO GUI, as copied into the text files - in the testdata directory. - -commit 80b451ddb4e749041c2b216603274a012dc83d59 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-30 14:28:23 +0100 - - PELMO summary files for testing - -commit 826cf9a2687ff1d7ca5b568882f5686f76f82074 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-30 14:11:34 +0100 - - Use relative tolerance of 1e-6 for flux test - - to pass test also for more extreme situations as in the current test data. - -commit eea72720956dc8358fac98b29c9a627a9363cbd2 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-30 13:12:24 +0100 - - Better documentation of PELMO_runs(). - -commit d78d2effd517ab3c27412ae6f4ae701c456ae590 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-30 12:46:57 +0100 - - pfm for windows in my drat - -commit eaf3b558747ff8228e87ded727a6c0e91a6579f8 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-30 12:01:14 +0100 - - More extreme parameters for metabolites for testing - -commit a6c13f70f6c6669a8088827a602ac475fdf9b624 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-29 16:58:53 +0100 - - Setting up PELMO runs, execution and evaluation - - It all works! - -commit bc97a35a32c4f47e29364488a3601f94c6e68d45 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-27 18:33:45 +0100 - - Really use all scenarios in test data - - Maize, that was used in the last commit, is not parameterised for - Jokioinen - -commit a4081ddfea726283874968c0b62a7f46e4fd1232 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-27 18:23:35 +0100 - - Use all scenarios in the test data - -commit 3c82d26206e2f2e74600acd71a49c70eaed555c4 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-27 08:17:08 +0100 - - Also test run with metabolites - -commit 8fd050e57b7babfbdb1ccfabb468a0398396d466 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-27 07:54:53 +0100 - - Include a run with metabolites in PELMO test data - -commit b38055278d4a801598ece9d2c93716a9bf67134a -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-27 01:00:07 +0100 - - Set up FOCUS PELMO runs and run them in parallel - - - This works on Linux using wine - - PELMO runs (including pelmo.inp files) are correctly generated - - The PLM files for FOCUS Pesticide_D in the test data archive are - correctly reproduced - - The data files (including FOCUS groundwater scenario data) are now - created and documented in R files - -commit 40c2f387775a168df1be699813807586cf098648 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-26 10:30:32 +0100 - - Improved test data with 'irrigation' - -commit 228ab628b407af4812a48f20693a9a3a6bba8af4 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-25 16:45:24 +0100 - - More variable selection of test data - -commit bf6634b7d9a5033a217f04060f77e0c7d5b3046a -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-25 15:27:05 +0100 - - Use tar.bz2 to correctly transfer file names - -commit 476d556cb6a490b138e47d487dd732f298aa6c3d -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-25 14:29:41 +0100 - - Add FOCUS PELMO 5.5.3 output for dummy pesticide D - -commit 9f16be247e851c948edb30ac756550d89ba0af52 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-19 11:44:22 +0100 - - Another correction of the docs - -commit 2ab822d51c4c7e29d62076336d7a3f02a46e41a5 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-19 11:41:19 +0100 - - Corrections in the documentation - -commit 46883a0c3a3c00127a563a7befa0af440573baaa -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-19 11:22:08 +0100 - - Correct default y axis label for plot.one_box - -commit 3947731a5a8c3598271b26f5201dea4bcb13ef6d -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-19 10:47:09 +0100 - - Fix one_box for ini = 1, use in sawtooth examples - -commit dd30f0d0ff1d8d0cc46aaef6e0917c51fe798f52 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-19 10:36:19 +0100 - - Move mkin::twa to pfm::max_twa.mkinfit - - - Add max_twa.mkinfit() recently introduced to mkin as mkin::twa() but - never released with it - - Add a test to check max_twa.one_box() against analytical solutions in - max_twa.mkinfit(). - - Clean up R CMD check - - Update docs - -commit 3ead7acba845b4f2552f555dfb29da889ed0cda8 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-19 09:42:21 +0100 - - Make max_twa() a bit safer - -commit 74ed85b07f09ea99476208749cd274a476ba4536 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-19 09:27:36 +0100 - - Documentation updates - -commit a6d61c06d573574cf574ed893cc13808a9e8b785 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-19 09:20:22 +0100 - - Fix order of arguments to one_box, correct docs - -commit b8ac1393b9e1bef8c48b26b790cf5759ccd69fed -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-19 09:10:37 +0100 - - Predict parent decline without fitting for non-SFO models - -commit 3d4f6f8c582c19c38587ead305a1229ff069da63 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-19 08:24:44 +0100 - - Switch sawtooth plotting example to FOMC - - as this it is claimed in the README that an mkinfit prediction is used. - - Add another seealso link - - Delete trailing whitespace - -commit 9b5faa8b8475bdd7624c58b07d45d28d42a47a2e -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-18 23:02:14 +0100 - - Point to the github.io documentation site - -commit cff68edc1ac113ac9e159dfdf7cfcbb6721ff2a7 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-18 22:58:51 +0100 - - Make README.md simple, and point to the reference - -commit a76221d87485029444c8e684022ca606a0c7e68d -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-18 22:41:01 +0100 - - Update static docs using pkgdown - - - Add _pkgdown.yml for a structured function/data reference - - Make seealso links active - - Make mkinfit calls quiet - - Use pkgdown branch from pull request hadley/pkgdown#229 to have topics - ordered - -commit a1d9f93138c2cfed92a683e37e72c737d52b7ad7 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2017-01-18 19:58:13 +0100 - - One box time series and twa values - - - one_box() creates decline time series from mkinfit objects or simply - from a half-life - - sawtooth() generates sawtooth curves for arbitrary application - patterns and decline models - - twa() calculates moving window averages - - max_twa() gives their maxima and - - plot.one_box() can plot series generated by one_box() or sawtooth(), - optionally adding a greay rectangle to illustrate the maximum moving - window time weighted average - -commit bba2cf3a70849ba86f37520d3e909cf1c706f416 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2016-12-22 11:06:57 +0100 - - Fix reading in times from .out files - - The code from the previous commit was broken. Also, the time - zone for the times that are read is now wet to 'UTC', in order to - avoid setting different time zones due to daylight savings, which - introduces artificial one-hour offsets on changeover days. - -commit 0af7c7b8c34067fc4756929925239c329b28ed32 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2016-12-14 18:26:14 +0100 - - Changelog update and roxygen run - -commit 5a04ad3061c1484b45703e44149f49ec97cfbf15 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2016-12-14 16:52:14 +0100 - - Set time correctly for 00:00 hours in .out file - - For ConLiqWatLayCur_xxxxx entries which are output at 00:00 (midnight), - no time is listed in the .out file for this time. This commit introduces - a workaround, setting the time to 00:00 when there is no time - information. - -commit e51e063564bffcb75dbb6ab7a364704c8d8e992e -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2016-12-12 21:24:24 +0100 - - Fix reading .out for acronyms containing numbers - -commit 9124e0f7d673c65584c1b2f838a3b944ea89c31d -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2016-10-13 17:49:18 +0200 - - Add drat target, remove unmaintained usage hints - -commit 12a31f4c130c551f82232d9ef7dfb608bd52c53f -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2016-09-27 23:00:48 +0200 - - Reorganise repository using standard package layout - -commit 0d958ab6f84b569b5437f231c56004890c4ae23b -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2016-09-27 17:50:34 +0200 - - Make the chents package optional - -commit 399383adcdb37c4a3e32f1a2133a2fa3663618d0 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2016-09-23 18:23:00 +0200 - - Keep the graph for the markdown file - - The markdown file is not self-contained as the html file... - -commit 9fb69b042924045df90119e47ad4dc666dbc8b4d -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2016-09-23 18:16:51 +0200 - - Slightly update the README - -commit 2f618da8cfbeb0379f4d38af6f608a69c6d54bd5 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2016-07-30 11:29:09 +0200 - - Update static documentation - -commit 3b8730a58f7846b5261922ec90e582e0158a54c7 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2016-07-30 11:09:47 +0200 - - Add 'methods' to dependecies - -commit 3260b0e875b7af24f2aef7bc2464418525a192df -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2016-07-30 11:08:05 +0200 - - Fix the TOXSWA reading test - - Since a recent commit we are reading the concentrations at the end - of each hour, so the test needed to be updated accordingly - -commit b8f953d04e4094c79b4f860d99f3c1466ed3ad6a -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2016-07-30 11:06:53 +0200 - - Import 'is' from methods - -commit 1ceb226d999d56276c9e361f359368287a0749c4 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2016-07-30 10:42:48 +0200 - - Read cwas from .out files with metabolites - - TOXSWA 4 stores the detailed output for SWASH runs with metabolites - in its .out files. With this commit it is possible to read in - .out files from such runs with metabolites. Default is to read in - the concentrations for the parent, a newly gained "substance" argument - makes it possible to specify the metabolite for which the data should - be read. - -commit d6b230cd1b415a112009227bc9e0ff50316c42f7 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2016-07-15 15:05:22 +0200 - - Fix calculation of t_firstjan - - There is an inconsistency in (some?) output files, so the first - datetime needs to be fixed before reading it into a data frame - -commit b45c9bfae9e5578dd455ed417363b4996cffd46a -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2016-06-08 08:36:48 +0200 - - Clean up remainders of NL drift calculation function - -commit 234a20018fe9fe9824bcfaae2c391e59d09f9871 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2016-06-08 08:29:39 +0200 - - Use the concentration at the end of the hour - - This is also what TOXSWA presents in the summary files - -commit 4284c57c7d53a9aef0c917a050ccf2ab779cfce3 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2016-06-08 08:29:39 +0200 - - Use the concentration at the end of the hour - - This is also what TOXSWA presents in the summary files - -commit 057d53d0faed7b297bbb99de8cd4bf3e3e448538 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2016-03-10 05:28:03 +0100 - - Merge the NL drift calculations based on percentages into PEC_sw_drift - -commit 527d927371083e784ad583a6b3c7465c49a53cdc -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2016-03-10 05:17:45 +0100 - - Add NL specific drift calculations - -commit 1ab6d4c9f186fb7ea9bb8b968e47a9f1eab64583 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2016-03-02 17:51:21 +0100 - - Fix the name of the Chateadun scenario - -commit d14923ae1ac023c8f8f5ae8b5c0884f4247f764b -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2016-02-04 18:06:15 +0100 - - Test reading .out files and close connections - -commit 98a706373107188496a1df295697e739e51d6b06 -Author: Johannes Ranke <johannes.ranke@jrwb.de> -Date: 2016-02-04 17:45:02 +0100 - - Improve reading spead for new TOXSWA format - -commit 057ba40426d49e09c06db26fb7d4072741b4cb8d -Author: Johannes Ranke <johannes.ranke@jrwb.de> -Date: 2016-02-04 12:21:02 +0100 - - Read cwa data from TOXSWA 4.4.2 .out files - -commit e7f8a0e82b24d28b74681dafc97f1cf8a4662b51 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-12-27 12:30:20 +0100 - - Fix rounding of endpoint retrieval functions - -commit f9373e361dde232b08fe7431e85bf367a1cfc269 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-12-27 12:29:37 +0100 - - Another useless variant to avoid warnings in staticdoc plots - -commit 3a579d87820ccbec514f1be5eb090e874fd87eec -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-12-22 19:32:54 +0100 - - EFSA 2015 tier 1 PEC soil, clean up, add static docs - -commit 9851a97ec915ddbfc8357f1a7e2cabae56c89f7d -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-12-18 14:45:24 +0100 - - Documentation fixes, chents is currently a hard dependency - -commit 6b4e342b240baaf18150360986d15895fc80a937 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-10-15 14:41:26 +0200 - - Add endpoint and GUS functions, roxygenize - -commit c43b4947007b3c26bc56260499af51c41b8cd702 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-10-01 14:42:14 +0200 - - Add some soil data for FOCUS groundwater scenarios - -commit 697e0554bf89a63f23b9ab5548e31f218bc483e9 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-09-11 10:07:53 +0200 - - Added PEC soil for products as defined in chents v0.1-2 - -commit 634d4a0a93882a3b2d3961abbdd33694fd93dcc6 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-09-10 16:18:17 +0200 - - Add PEC soil for product with serveral ais - -commit 1ec3ee4a03d4e47fdd3be1bcbe754e478353410b -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-08-22 12:10:06 +0200 - - Updates of DESCRIPTION and NAMESPACE - -commit 51aa1a77c9b9b9a6becdb2a5a85213946719b051 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-08-22 12:06:37 +0200 - - Add README.html for cgit on jrwb.de - -commit 83c8575e2abde12208584b9c80935d4a873689fd -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-08-22 12:01:57 +0200 - - Small documentation updates - -commit 5038ba57fef6cc386566ec30f3d5dd67e62decff -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-08-21 15:10:42 +0200 - - Adapt the description to R CMD check requirements - -commit 4477e69b46e88c196f354463190753650157ea0d -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-08-21 15:01:10 +0200 - - Updates to pass checks and tests - -commit ad4cd5d9a1f8c3976d08048a441129b1fb49a62b -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-07-02 16:05:59 +0200 - - Changes to pass R CMD check --as-cran, roxygen run - -commit fef0bb7fe916f91dcff089c17aa3290c0ea1ab1f -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-06-12 02:19:38 +0200 - - Add sediment PEC calculations using the percentage method - -commit 5b32c30549bfa3cb42ffde7e13f75608b98c79c2 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-06-12 02:19:01 +0200 - - Make UK drainage with non-SFO soil degradation work - -commit 9b8e5cb80ba4a89578d979bee134f8342ca0a527 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-06-11 17:38:01 +0200 - - Now we pass R CMD check - -commit dd803b191062925eda830543236836e7822fd884 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-06-11 16:57:43 +0200 - - Add UK tier 1 drainage PEC calculations - -commit 09cf970942706cfab43753d298b42e8d85216d80 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-06-11 15:25:22 +0200 - - Now there is enough content to warrant 0.2-x - -commit 3aa5fb86772c28402047c7ebd07841061dbcdbba -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-06-11 15:23:22 +0200 - - Add facilities to calculate decline curves - -commit d3daa7b73fa5d0508ff51a843247d126c2a11691 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-06-11 13:17:13 +0200 - - Generate README.md with current pfm version - -commit cb0d72e2c2d431bd32ffb129b62ea1a522cbdfeb -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-06-11 13:09:10 +0200 - - Rename PEC_sw_drift() to PEC_sw_drift_ini() - -commit ea9b75183bcf41fcdd6f61ec6060e94c4bc321a2 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-06-11 12:13:47 +0200 - - Add simple drift PEC ini calculations - - These are tested for field crops with the CRD spreadsheet - -commit cbba81d73faa83c63a33afc61be5efc1964925bb -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-06-11 12:12:40 +0200 - - Use devtools for roxygenizing, improve logging - -commit 6e4a152925011528c21937f12bc53042a53f72de -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-06-11 10:13:18 +0200 - - JKI drift percentage data for field crops and pome/stone fruit - -commit 53099978c971ee8e5c94e67bf972f51629d67fd3 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-06-11 10:04:22 +0200 - - and the incomplete documentation - -commit 372ab2f2f59f0baaee759ce966a705f9f754cf6d -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-06-11 10:03:32 +0200 - - Intermediate stage for pfm_chent - -commit 586b248f5d249f4ebaad2175c9f78fcae8646636 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-06-11 09:54:57 +0200 - - Formatting - -commit fd1609aafd2f40266c1e29d8dfdf5e08e8838d35 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-05-24 03:52:28 +0200 - - Start of a pfm_chent data object - -commit e2b1d510e921f7721647b0df6602c2618937c1da -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-05-08 08:47:11 +0200 - - Update the Figure in the README - -commit 8021c7cb9aac06e961227a3c0e0b013ec2d2d501 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-05-07 16:15:23 +0200 - - Bugfix: Reset maximum event concentration for each event - -commit 508d883f7689d617d15915dbd26a27f1613bb857 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-05-07 12:04:28 +0200 - - Make quarterly labels for plot.TOXSWA_cwa - -commit c6e57ab29170266b3038b01c54bf161ab361d440 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-04-24 02:22:21 +0200 - - Do not test the path to the zip file - -commit 7d2096855edcc196629c1c7a9983a56ec6addd1e -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-04-24 02:21:04 +0200 - - Add a geometric mean function - -commit bcfe0af7970efe36c3aa661e89953fbe3689c310 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-04-24 02:20:21 +0200 - - Clean the Makefile a bit - -commit 768a043848dd84b9e699916657d0a23b2f3b9e83 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-04-22 13:48:42 +0200 - - Fix header formatting - -commit 04502ca0c658a6c929debd61aee87be8c7eceb04 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-04-22 13:46:32 +0200 - - Update markdown version of README - -commit ec79637749d300ab4ca170805c673905e52d67dd -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-04-22 13:42:10 +0200 - - Add simplest PEC soil calcs, use testthat - -commit 8ffbc49b3f01deac6f9e83aaa6d318d4e2f8552b -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-01-23 16:44:04 +0100 - - Add option to plot relative to maximum - -commit 8975dc148d0a6f222174980eb60314054be9b6cf -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-01-13 14:54:58 +0100 - - Fix warning in README - -commit 891af5d0f1ee8d45cd4403af43293463d23ba96b -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-01-13 14:05:31 +0100 - - README.rmd with example, fix reading unzipped files - -commit 4d74570f1ca4a94d894c6c5169684a8246d0a51c -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-01-13 12:58:26 +0100 - - Correctly initialize R6 fields, read from zip files - -commit ee070c11f7c7faff2f573d27cf32aafab78971a8 -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2015-01-07 23:56:54 +0100 - - Pass ... parameters to added cwa lines - -commit 92d97ba99d7b90d95a67796cb5e68f28f752b70b -Author: Johannes Ranke <jranke@uni-bremen.de> -Date: 2014-12-17 21:39:42 +0100 - - Initial commit: R6 class for TOXSWA cwa files |