diff options
Diffstat (limited to 'R/PEC_sw_focus.R')
| -rw-r--r-- | R/PEC_sw_focus.R | 19 |
1 files changed, 10 insertions, 9 deletions
diff --git a/R/PEC_sw_focus.R b/R/PEC_sw_focus.R index c01dece..4d5139e 100644 --- a/R/PEC_sw_focus.R +++ b/R/PEC_sw_focus.R @@ -24,24 +24,24 @@ #' @note Step 2 is not implemented. #' @export #' @param parent A list containing substance specific parameters, e.g. -#' conveniently generated by \code{\link{chent_focus_sw}}. +#' conveniently generated by [chent_focus_sw]. #' @param rate The application rate in g/ha. Overriden when #' applications are given explicitly #' @param n The number of applications #' @param i The application interval #' @param comment A comment for the input file #' @param met A list containing metabolite specific parameters. e.g. -#' conveniently generated by \code{\link{chent_focus_sw}}. If not NULL, +#' conveniently generated by [chent_focus_sw]. If not NULL, #' the PEC is calculated for this compound, not the parent. #' @param f_drift The fraction of the application rate reaching the waterbody #' via drift. If NA, this is derived from the scenario name and the number #' of applications via the drift data defined by the -#' \code{\link{FOCUS_Step_12_scenarios}} +#' [FOCUS_Step_12_scenarios] #' @param f_rd The fraction of the amount applied reaching the waterbody via #' runoff/drainage. At Step 1, it is assumed to be 10%, be it the #' parent or a metabolite #' @param scenario The name of the scenario. Must be one of the scenario -#' names given in \code{\link{FOCUS_Step_12_scenarios}} +#' names given in [FOCUS_Step_12_scenarios] #' @param region 'n' for Northern Europe or 's' for Southern Europe. If NA, only #' Step 1 PECsw are calculated #' @param season 'of' for October to February, 'mm' for March to May, and 'js' @@ -64,7 +64,7 @@ #' #' # Metabolite #' new_dummy <- chent_focus_sw("New Dummy", mw = 250, Koc = 100) -#' M1 <- chent_focus_sw("M1", mw = 100, cwsat = 100, DT50_ws = 100, Koc = 50, +#' M1 <- chent_focus_sw("M1", mw = 100, cwsat = 100, DT50_ws = 100, Koc = 50, #' max_ws = 0, max_soil = 0.5) #' PEC_sw_focus(new_dummy, 1000, scenario = "cereals, winter", met = M1) PEC_sw_focus <- function(parent, rate, n = 1, i = NA, @@ -81,8 +81,9 @@ PEC_sw_focus <- function(parent, rate, n = 1, i = NA, { if (n > 1 & is.na(i)) stop("Please specify the interval i if n > 1") + scenario = match.arg(scenario) + if (is.na(f_drift)) { - scenario = match.arg(scenario) f_drift = FOCUS_Step_12_scenarios$drift[scenario, "1"] / 100 # For Step 2 we would select the reduced percentiles for multiple apps: if (n <= 8) { @@ -128,7 +129,6 @@ PEC_sw_focus <- function(parent, rate, n = 1, i = NA, } on.exit(close(txt)) - scenario = match.arg(scenario) region = match.arg(region) season = match.arg(season) interception = match.arg(interception) @@ -179,10 +179,11 @@ PEC_sw_focus <- function(parent, rate, n = 1, i = NA, reg_sea = reg_code + sea_code } + scenario_safe <- sub(" /", " or", scenario) if (is.null(met)) { - name_input <- paste(parent$name, scenario, region, season) + name_input <- paste(parent$name, scenario_safe, region, season) } else { - name_input <- paste(met$name, scenario, region, season) + name_input <- paste(met$name, scenario_safe, region, season) } if (comment != "") name_input = paste(name_input, comment) |