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diff --git a/docs/read.TOXSWA_cwa.html b/docs/read.TOXSWA_cwa.html deleted file mode 100644 index cc34733..0000000 --- a/docs/read.TOXSWA_cwa.html +++ /dev/null @@ -1,142 +0,0 @@ -<!DOCTYPE html> -<html lang="en"> - <head> - <meta charset="utf-8"> -<title>read.TOXSWA_cwa. pfm 0.3-8</title> -<meta name="viewport" content="width=device-width, initial-scale=1.0"> -<meta name="author" content=" -Johannes Ranke -"> - -<link href="css/bootstrap.css" rel="stylesheet"> -<link href="css/bootstrap-responsive.css" rel="stylesheet"> -<link href="css/highlight.css" rel="stylesheet"> -<link href="css/staticdocs.css" rel="stylesheet"> - -<!--[if lt IE 9]> - <script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script> -<![endif]--> - -<script type="text/x-mathjax-config"> - MathJax.Hub.Config({ - tex2jax: { - inlineMath: [ ['$','$'], ["\\(","\\)"] ], - processEscapes: true - } - }); -</script> -<script type="text/javascript" - src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"> -</script> - </head> - - <body> - <div class="navbar"> - <div class="navbar-inner"> - <div class="container"> - <a class="brand" href="index.html">pfm 0.3-8</a> - <div class="nav"> - <ul class="nav"> - <li><a href="index.html">Home</a></li> - <li><a href="reference.html">Reference</a></li> - </ul> - </div> - </div> - </div> -</div> - - - <div class="container"> - <header> - - </header> - - <h1>Read TOXSWA surface water concentrations</h1> - -<div class="row"> - <div class="span8"> - <h2>Usage</h2> - <pre><span class="functioncall"><a href='read.TOXSWA_cwa.html'>read.TOXSWA_cwa</a></span><span class="keyword">(</span><span class="symbol">filename</span><span class="keyword">,</span> <span class="argument">basedir</span> <span class="argument">=</span> <span class="string">"."</span><span class="keyword">,</span> <span class="argument">zipfile</span> <span class="argument">=</span> NULL<span class="keyword">,</span> <span class="argument">segment</span> <span class="argument">=</span> <span class="string">"last"</span><span class="keyword">,</span> - <span class="argument">substance</span> <span class="argument">=</span> <span class="string">"parent"</span><span class="keyword">,</span> <span class="argument">total</span> <span class="argument">=</span> <span class="number">FALSE</span><span class="keyword">,</span> <span class="argument">windows</span> <span class="argument">=</span> NULL<span class="keyword">,</span> - <span class="argument">thresholds</span> <span class="argument">=</span> NULL<span class="keyword">)</span></pre> - - <h2>Arguments</h2> - <dl> - <dt>filename</dt> - <dd>The filename of the cwa file (TOXSWA 2.x.y or similar) or the -out file (FOCUS TOXSWA 4, i.e. TOXSWA 4.4.2 or similar).</dd> - <dt>basedir</dt> - <dd>The path to the directory where the cwa file resides.</dd> - <dt>zipfile</dt> - <dd>Optional path to a zip file containing the cwa file.</dd> - <dt>segment</dt> - <dd>The segment for which the data should be read. Either "last", or -the segment number.</dd> - <dt>substance</dt> - <dd>For TOXSWA 4 .out files, the default value "parent" leads -to reading concentrations of the parent compound. Alternatively, the substance -of interested can be selected by its code name.</dd> - <dt>total</dt> - <dd>Set this to TRUE in order to read total concentrations as well. This is -only necessary for .out files as generated by TOXSWA 4.4.2 or similar, not for .cwa -files. For .cwa files, the total concentration is always read as well.</dd> - <dt>windows</dt> - <dd>Numeric vector of width of moving windows in days, for calculating -maximum time weighted average concentrations and areas under the curve.</dd> - <dt>thresholds</dt> - <dd>Numeric vector of threshold concentrations in µg/L for -generating event statistics.</dd> - </dl> - - <div class="Value"> - <h2>Value</h2> - - <p><dl> -An instance of an R6 object of class -<code><a href='TOXSWA_cwa.html'>TOXSWA_cwa</a></code>. -</dl></p> - - </div> - - <div class="Description"> - <h2>Description</h2> - - <p>Read TOXSWA hourly concentrations of a chemical substance in a specific -segment of a TOXSWA surface water body. Per default, the data for the last -segment are imported. As TOXSWA 4 reports the values at the end of the hour -(ConLiqWatLayCur) in its summary file, we use this value as well instead -of the hourly averages (ConLiqWatLay).</p> - - </div> - - <h2 id="examples">Examples</h2> - <pre class="examples"><div class='input'><span class="symbol">H_sw_D4_pond</span> <span class="assignement"><-</span> <span class="functioncall"><a href='read.TOXSWA_cwa.html'>read.TOXSWA_cwa</a></span><span class="keyword">(</span><span class="string">"00001p_pa.cwa"</span><span class="keyword">,</span> - <span class="argument">basedir</span> <span class="argument">=</span> <span class="string">"SwashProjects/project_H_sw/TOXSWA"</span><span class="keyword">,</span> - <span class="argument">zipfile</span> <span class="argument">=</span> <span class="functioncall"><a href='http://www.rdocumentation.org/packages/devtools/topics/system.file'>system.file</a></span><span class="keyword">(</span><span class="string">"testdata/SwashProjects.zip"</span><span class="keyword">,</span> - <span class="argument">package</span> <span class="argument">=</span> <span class="string">"pfm"</span><span class="keyword">)</span><span class="keyword">)</span></div></pre> - </div> - <div class="span4 sidebar"> - <!-- <ul> - <li>read.TOXSWA_cwa</li> - </ul> - <ul> - - </ul> --> - - - - <h2>Author</h2> - -Johannes Ranke - - - </div> -</div> - - <footer> - <p class="pull-right"><a href="#">Back to top</a></p> -<p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. Styled with <a href="https://getbootstrap.com/2.0.4/">bootstrap</a>.</p> - </footer> - </div> - </body> -</html>
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