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class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false"> @@ -73,35 +18,21 @@ The text file is not included in the package as its licence is not clear." /> </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.7</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="">0.6.1</span> </span> </div> <div id="navbar" class="navbar-collapse collapse"> - <ul class="nav navbar-nav"> - <li> - <a href="../index.html"> - <span class="fas fa fas fa-home fa-lg"></span> - - </a> -</li> -<li> + <ul class="nav navbar-nav"><li> <a href="../reference/index.html">Reference</a> </li> - </ul> - <ul class="nav navbar-nav navbar-right"> - - </ul> - - </div><!--/.nav-collapse --> + </ul><ul class="nav navbar-nav navbar-right"></ul></div><!--/.nav-collapse --> </div><!--/.container --> </div><!--/.navbar --> - </header> - -<div class="row"> + </header><div class="row"> <div class="col-md-9 contents"> <div class="page-header"> <h1>Step 1/2 scenario data as distributed with the FOCUS Step 1/2 calculator</h1> @@ -115,210 +46,78 @@ The text file is not included in the package as its licence is not clear.</p> </div> - - <h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2> - + <div id="format"> + <h2>Format</h2> <p>A list containing the scenario names in a character vector called 'names', the drift percentiles in a matrix called 'drift', interception percentages in a matrix called 'interception' and the runoff/drainage percentages for Step 2 calculations in a matrix called 'rd'.</p> + </div> - <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2> - <pre class="examples"><div class='input'> -<span class='kw'>if</span> (<span class='fl'>FALSE</span>) { - <span class='co'># This is the code that was used to extract the data</span> - <span class='no'>scenario_path</span> <span class='kw'><-</span> <span class='st'>"inst/extdata/FOCUS_Step_12_scenarios.txt"</span> - <span class='no'>scenarios</span> <span class='kw'><-</span> <span class='fu'><a href='https://rdrr.io/r/base/readLines.html'>readLines</a></span>(<span class='no'>scenario_path</span>)[<span class='fl'>9</span>:<span class='fl'>38</span>] - <span class='no'>FOCUS_Step_12_scenarios</span> <span class='kw'><-</span> <span class='fu'><a href='https://rdrr.io/r/base/list.html'>list</a></span>() - <span class='no'>sce</span> <span class='kw'><-</span> <span class='fu'><a href='https://rdrr.io/r/utils/read.table.html'>read.table</a></span>(<span class='kw'>text</span> <span class='kw'>=</span> <span class='no'>scenarios</span>, <span class='kw'>sep</span> <span class='kw'>=</span> <span class='st'>"\t"</span>, <span class='kw'>header</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>check.names</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, - <span class='kw'>stringsAsFactors</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>) - <span class='no'>FOCUS_Step_12_scenarios</span>$<span class='no'>names</span> <span class='kw'>=</span> <span class='no'>sce</span>$<span class='no'>Crop</span> - <span class='fu'><a href='https://rdrr.io/r/base/colnames.html'>rownames</a></span>(<span class='no'>sce</span>) <span class='kw'><-</span> <span class='no'>sce</span>$<span class='no'>Crop</span> - <span class='no'>FOCUS_Step_12_scenarios</span>$<span class='no'>drift</span> <span class='kw'>=</span> <span class='no'>sce</span>[, <span class='fl'>3</span>:<span class='fl'>11</span>] - <span class='no'>FOCUS_Step_12_scenarios</span>$<span class='no'>interception</span> <span class='kw'>=</span> <span class='no'>sce</span>[, <span class='fl'>12</span>:<span class='fl'>15</span>] - <span class='no'>sce_2</span> <span class='kw'><-</span> <span class='fu'><a href='https://rdrr.io/r/base/readLines.html'>readLines</a></span>(<span class='no'>scenario_path</span>)[<span class='fl'>41</span>:<span class='fl'>46</span>] - <span class='no'>rd</span> <span class='kw'><-</span> <span class='fu'><a href='https://rdrr.io/r/utils/read.table.html'>read.table</a></span>(<span class='kw'>text</span> <span class='kw'>=</span> <span class='no'>sce_2</span>, <span class='kw'>sep</span> <span class='kw'>=</span> <span class='st'>"\t"</span>)[<span class='fl'>1</span>:<span class='fl'>2</span>] - <span class='no'>rd_mat</span> <span class='kw'><-</span> <span class='fu'><a href='https://rdrr.io/r/base/matrix.html'>matrix</a></span>(<span class='no'>rd</span>$<span class='no'>V2</span>, <span class='kw'>nrow</span> <span class='kw'>=</span> <span class='fl'>3</span>, <span class='kw'>byrow</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>) - <span class='fu'><a href='https://rdrr.io/r/base/dimnames.html'>dimnames</a></span>(<span class='no'>rd_mat</span>) <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/list.html'>list</a></span>(<span class='kw'>Time</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='st'>"Oct-Feb"</span>, <span class='st'>"Mar-May"</span>, <span class='st'>"Jun-Sep"</span>), - <span class='kw'>Region</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='st'>"North"</span>, <span class='st'>"South"</span>)) - <span class='no'>FOCUS_Step_12_scenarios</span>$<span class='no'>rd</span> <span class='kw'>=</span> <span class='no'>rd_mat</span> - <span class='fu'><a href='https://rdrr.io/r/base/save.html'>save</a></span>(<span class='no'>FOCUS_Step_12_scenarios</span>, <span class='kw'>file</span> <span class='kw'>=</span> <span class='st'>"data/FOCUS_Step_12_scenarios.RData"</span>) -} - -<span class='co'># And this is the resulting data</span> -<span class='no'>FOCUS_Step_12_scenarios</span></div><div class='output co'>#> $names -#> [1] "cereals, spring" "cereals, winter" -#> [3] "citrus" "cotton" -#> [5] "field beans" "grass / alfalfa" -#> [7] "hops" "legumes" -#> [9] "maize" "oil seed rape, spring" -#> [11] "oil seed rape, winter" "olives" -#> [13] "pome / stone fruit, early applns" "pome / stone fruit, late applns" -#> [15] "potatoes" "soybeans" -#> [17] "sugar beets" "sunflowers" -#> [19] "tobacco" "vegetables, bulb" -#> [21] "vegetables, fruiting" "vegetables, leafy" -#> [23] "vegetables, root" "vines, early applns" -#> [25] "vines, late applns" "appln, aerial" -#> [27] "appln, hand (crop < 50 cm)" "appln, hand (crop > 50 cm)" -#> [29] "no drift (incorp or seed trtmt)" -#> -#> $drift -#> 1 2 3 4 5 6 -#> cereals, spring 2.759 2.438 2.024 1.862 1.794 1.631 -#> cereals, winter 2.759 2.438 2.024 1.862 1.794 1.631 -#> citrus 15.725 12.129 11.011 10.124 9.743 9.204 -#> cotton 2.759 2.438 2.024 1.862 1.794 1.631 -#> field beans 2.759 2.438 2.024 1.862 1.794 1.631 -#> grass / alfalfa 2.759 2.438 2.024 1.862 1.794 1.631 -#> hops 19.326 17.723 15.928 15.378 15.114 14.902 -#> legumes 2.759 2.438 2.024 1.862 1.794 1.631 -#> maize 2.759 2.438 2.024 1.862 1.794 1.631 -#> oil seed rape, spring 2.759 2.438 2.024 1.862 1.794 1.631 -#> oil seed rape, winter 2.759 2.438 2.024 1.862 1.794 1.631 -#> olives 15.725 12.129 11.011 10.124 9.743 9.204 -#> pome / stone fruit, early applns 29.197 25.531 23.960 23.603 23.116 22.760 -#> pome / stone fruit, late applns 15.725 12.129 11.011 10.124 9.743 9.204 -#> potatoes 2.759 2.438 2.024 1.862 1.794 1.631 -#> soybeans 2.759 2.438 2.024 1.862 1.794 1.631 -#> sugar beets 2.759 2.438 2.024 1.862 1.794 1.631 -#> sunflowers 2.759 2.438 2.024 1.862 1.794 1.631 -#> tobacco 2.759 2.438 2.024 1.862 1.794 1.631 -#> vegetables, bulb 2.759 2.438 2.024 1.862 1.794 1.631 -#> vegetables, fruiting 2.759 2.438 2.024 1.862 1.794 1.631 -#> vegetables, leafy 2.759 2.438 2.024 1.862 1.794 1.631 -#> vegetables, root 2.759 2.438 2.024 1.862 1.794 1.631 -#> vines, early applns 2.699 2.496 2.546 2.499 2.398 2.336 -#> vines, late applns 8.028 7.119 6.898 6.631 6.636 6.431 -#> appln, aerial 33.200 33.200 33.200 33.200 33.200 33.200 -#> appln, hand (crop < 50 cm) 2.759 2.438 2.024 1.862 1.794 1.631 -#> appln, hand (crop > 50 cm) 8.028 7.119 6.898 6.631 6.636 6.431 -#> no drift (incorp or seed trtmt) 0.000 0.000 0.000 0.000 0.000 0.000 -#> 7 8 >8 -#> cereals, spring 1.578 1.512 1.512 -#> cereals, winter 1.578 1.512 1.512 -#> citrus 9.102 8.656 8.656 -#> cotton 1.578 1.512 1.512 -#> field beans 1.578 1.512 1.512 -#> grass / alfalfa 1.578 1.512 1.512 -#> hops 14.628 13.520 13.520 -#> legumes 1.578 1.512 1.512 -#> maize 1.578 1.512 1.512 -#> oil seed rape, spring 1.578 1.512 1.512 -#> oil seed rape, winter 1.578 1.512 1.512 -#> olives 9.102 8.656 8.656 -#> pome / stone fruit, early applns 22.690 22.241 22.241 -#> pome / stone fruit, late applns 9.102 8.656 8.656 -#> potatoes 1.578 1.512 1.512 -#> soybeans 1.578 1.512 1.512 -#> sugar beets 1.578 1.512 1.512 -#> sunflowers 1.578 1.512 1.512 -#> tobacco 1.578 1.512 1.512 -#> vegetables, bulb 1.578 1.512 1.512 -#> vegetables, fruiting 1.578 1.512 1.512 -#> vegetables, leafy 1.578 1.512 1.512 -#> vegetables, root 1.578 1.512 1.512 -#> vines, early applns 2.283 2.265 2.265 -#> vines, late applns 6.227 6.173 6.173 -#> appln, aerial 33.200 33.200 33.200 -#> appln, hand (crop < 50 cm) 1.578 1.512 1.512 -#> appln, hand (crop > 50 cm) 6.227 6.173 6.173 -#> no drift (incorp or seed trtmt) 0.000 0.000 0.000 -#> -#> $interception -#> no interception minimal crop cover -#> cereals, spring 0 0.00 -#> cereals, winter 0 0.00 -#> citrus 0 0.80 -#> cotton 0 0.30 -#> field beans 0 0.25 -#> grass / alfalfa 0 0.40 -#> hops 0 0.20 -#> legumes 0 0.25 -#> maize 0 0.25 -#> oil seed rape, spring 0 0.40 -#> oil seed rape, winter 0 0.40 -#> olives 0 0.70 -#> pome / stone fruit, early applns 0 0.20 -#> pome / stone fruit, late applns 0 0.20 -#> potatoes 0 0.15 -#> soybeans 0 0.20 -#> sugar beets 0 0.20 -#> sunflowers 0 0.20 -#> tobacco 0 0.20 -#> vegetables, bulb 0 0.10 -#> vegetables, fruiting 0 0.25 -#> vegetables, leafy 0 0.25 -#> vegetables, root 0 0.25 -#> vines, early applns 0 0.40 -#> vines, late applns 0 0.40 -#> appln, aerial 0 0.20 -#> appln, hand (crop < 50 cm) 0 0.20 -#> appln, hand (crop > 50 cm) 0 0.20 -#> no drift (incorp or seed trtmt) 0 0.00 -#> average crop cover full canopy -#> cereals, spring 0.20 0.70 -#> cereals, winter 0.20 0.70 -#> citrus 0.80 0.80 -#> cotton 0.60 0.75 -#> field beans 0.40 0.70 -#> grass / alfalfa 0.60 0.75 -#> hops 0.50 0.70 -#> legumes 0.50 0.70 -#> maize 0.50 0.75 -#> oil seed rape, spring 0.70 0.75 -#> oil seed rape, winter 0.70 0.75 -#> olives 0.70 0.70 -#> pome / stone fruit, early applns 0.40 0.65 -#> pome / stone fruit, late applns 0.40 0.65 -#> potatoes 0.50 0.70 -#> soybeans 0.50 0.75 -#> sugar beets 0.70 0.75 -#> sunflowers 0.50 0.75 -#> tobacco 0.70 0.75 -#> vegetables, bulb 0.25 0.40 -#> vegetables, fruiting 0.50 0.70 -#> vegetables, leafy 0.40 0.70 -#> vegetables, root 0.50 0.70 -#> vines, early applns 0.50 0.60 -#> vines, late applns 0.50 0.60 -#> appln, aerial 0.50 0.70 -#> appln, hand (crop < 50 cm) 0.50 0.70 -#> appln, hand (crop > 50 cm) 0.50 0.70 -#> no drift (incorp or seed trtmt) 0.00 0.00 -#> -#> $rd -#> Region -#> Time North South -#> Oct-Feb 5 4 -#> Mar-May 2 4 -#> Jun-Sep 2 3 -#> </div></pre> + <div id="ref-examples"> + <h2>Examples</h2> + <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span></span></span> +<span class="r-in"><span><span class="co"># \dontrun{</span></span></span> +<span class="r-in"><span> <span class="co"># This is the code that was used to extract the data</span></span></span> +<span class="r-in"><span> <span class="va">scenario_path</span> <span class="op"><-</span> <span class="st">"inst/extdata/FOCUS_Step_12_scenarios.txt"</span></span></span> +<span class="r-in"><span> <span class="va">scenarios</span> <span class="op"><-</span> <span class="fu"><a href="https://rdrr.io/r/base/readLines.html" class="external-link">readLines</a></span><span class="op">(</span><span class="va">scenario_path</span><span class="op">)</span><span class="op">[</span><span class="fl">9</span><span class="op">:</span><span class="fl">38</span><span class="op">]</span></span></span> +<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>cannot open file 'inst/extdata/FOCUS_Step_12_scenarios.txt': No such file or directory</span> +<span class="r-err co"><span class="r-pr">#></span> <span class="error">Error in file(con, "r"):</span> cannot open the connection</span> +<span class="r-in"><span> <span class="va">FOCUS_Step_12_scenarios</span> <span class="op"><-</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span><span class="op">)</span></span></span> +<span class="r-in"><span> <span class="va">sce</span> <span class="op"><-</span> <span class="fu"><a href="https://rdrr.io/r/utils/read.table.html" class="external-link">read.table</a></span><span class="op">(</span>text <span class="op">=</span> <span class="va">scenarios</span>, sep <span class="op">=</span> <span class="st">"\t"</span>, header <span class="op">=</span> <span class="cn">TRUE</span>, check.names <span class="op">=</span> <span class="cn">FALSE</span>,</span></span> +<span class="r-in"><span> stringsAsFactors <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></span></span> +<span class="r-err co"><span class="r-pr">#></span> <span class="error">Error in eval(expr, envir, enclos):</span> object 'scenarios' not found</span> +<span class="r-in"><span> <span class="va">FOCUS_Step_12_scenarios</span><span class="op">$</span><span class="va">names</span> <span class="op">=</span> <span class="va">sce</span><span class="op">$</span><span class="va">Crop</span></span></span> +<span class="r-err co"><span class="r-pr">#></span> <span class="error">Error in eval(expr, envir, enclos):</span> object 'sce' not found</span> +<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/colnames.html" class="external-link">rownames</a></span><span class="op">(</span><span class="va">sce</span><span class="op">)</span> <span class="op"><-</span> <span class="va">sce</span><span class="op">$</span><span class="va">Crop</span></span></span> +<span class="r-err co"><span class="r-pr">#></span> <span class="error">Error in eval(expr, envir, enclos):</span> object 'sce' not found</span> +<span class="r-in"><span> <span class="va">FOCUS_Step_12_scenarios</span><span class="op">$</span><span class="va">drift</span> <span class="op">=</span> <span class="va">sce</span><span class="op">[</span>, <span class="fl">3</span><span class="op">:</span><span class="fl">11</span><span class="op">]</span></span></span> +<span class="r-err co"><span class="r-pr">#></span> <span class="error">Error in eval(expr, envir, enclos):</span> object 'sce' not found</span> +<span class="r-in"><span> <span class="va">FOCUS_Step_12_scenarios</span><span class="op">$</span><span class="va">interception</span> <span class="op">=</span> <span class="va">sce</span><span class="op">[</span>, <span class="fl">12</span><span class="op">:</span><span class="fl">15</span><span class="op">]</span></span></span> +<span class="r-err co"><span class="r-pr">#></span> <span class="error">Error in eval(expr, envir, enclos):</span> object 'sce' not found</span> +<span class="r-in"><span> <span class="va">sce_2</span> <span class="op"><-</span> <span class="fu"><a href="https://rdrr.io/r/base/readLines.html" class="external-link">readLines</a></span><span class="op">(</span><span class="va">scenario_path</span><span class="op">)</span><span class="op">[</span><span class="fl">41</span><span class="op">:</span><span class="fl">46</span><span class="op">]</span></span></span> +<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>cannot open file 'inst/extdata/FOCUS_Step_12_scenarios.txt': No such file or directory</span> +<span class="r-err co"><span class="r-pr">#></span> <span class="error">Error in file(con, "r"):</span> cannot open the connection</span> +<span class="r-in"><span> <span class="va">rd</span> <span class="op"><-</span> <span class="fu"><a href="https://rdrr.io/r/utils/read.table.html" class="external-link">read.table</a></span><span class="op">(</span>text <span class="op">=</span> <span class="va">sce_2</span>, sep <span class="op">=</span> <span class="st">"\t"</span><span class="op">)</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">2</span><span class="op">]</span></span></span> +<span class="r-err co"><span class="r-pr">#></span> <span class="error">Error in eval(expr, envir, enclos):</span> object 'sce_2' not found</span> +<span class="r-in"><span> <span class="va">rd_mat</span> <span class="op"><-</span> <span class="fu"><a href="https://rdrr.io/r/base/matrix.html" class="external-link">matrix</a></span><span class="op">(</span><span class="va">rd</span><span class="op">$</span><span class="va">V2</span>, nrow <span class="op">=</span> <span class="fl">3</span>, byrow <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></span></span> +<span class="r-err co"><span class="r-pr">#></span> <span class="error">Error in eval(expr, envir, enclos):</span> object 'rd' not found</span> +<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/dimnames.html" class="external-link">dimnames</a></span><span class="op">(</span><span class="va">rd_mat</span><span class="op">)</span> <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span>Time <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"Oct-Feb"</span>, <span class="st">"Mar-May"</span>, <span class="st">"Jun-Sep"</span><span class="op">)</span>,</span></span> +<span class="r-in"><span> Region <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"North"</span>, <span class="st">"South"</span><span class="op">)</span><span class="op">)</span></span></span> +<span class="r-err co"><span class="r-pr">#></span> <span class="error">Error:</span> object 'rd_mat' not found</span> +<span class="r-in"><span> <span class="va">FOCUS_Step_12_scenarios</span><span class="op">$</span><span class="va">rd</span> <span class="op">=</span> <span class="va">rd_mat</span></span></span> +<span class="r-err co"><span class="r-pr">#></span> <span class="error">Error in eval(expr, envir, enclos):</span> object 'rd_mat' not found</span> +<span class="r-in"><span> <span class="fu"><a href="https://rdrr.io/r/base/save.html" class="external-link">save</a></span><span class="op">(</span><span class="va">FOCUS_Step_12_scenarios</span>, file <span class="op">=</span> <span class="st">"data/FOCUS_Step_12_scenarios.RData"</span><span class="op">)</span></span></span> +<span class="r-wrn co"><span class="r-pr">#></span> <span class="warning">Warning: </span>cannot open compressed file 'data/FOCUS_Step_12_scenarios.RData', probable reason 'No such file or directory'</span> +<span class="r-err co"><span class="r-pr">#></span> <span class="error">Error in gzfile(file, "wb"):</span> cannot open the connection</span> +<span class="r-in"><span><span class="co"># }</span></span></span> +<span class="r-in"><span></span></span> +<span class="r-in"><span><span class="co"># And this is the resulting data</span></span></span> +<span class="r-in"><span><span class="va">FOCUS_Step_12_scenarios</span></span></span> +<span class="r-out co"><span class="r-pr">#></span> list()</span> +</code></pre></div> + </div> </div> <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar"> - <nav id="toc" data-toggle="toc" class="sticky-top"> - <h2 data-toc-skip>Contents</h2> - </nav> - </div> + <nav id="toc" data-toggle="toc" class="sticky-top"><h2 data-toc-skip>Contents</h2> + </nav></div> </div> - <footer> - <div class="copyright"> - <p>Developed by Johannes Ranke.</p> + <footer><div class="copyright"> + <p></p><p>Developed by Johannes Ranke.</p> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.5.1.</p> + <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p> </div> - </footer> - </div> + </footer></div> - </body> -</html> + 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