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1 files changed, 43 insertions, 116 deletions
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- - - </head> +<![endif]--></head><body data-spy="scroll" data-target="#toc"> + - <body> <div class="container template-reference-topic"> - <header> - <div class="navbar navbar-default navbar-fixed-top" role="navigation"> + <header><div class="navbar navbar-default navbar-fixed-top" role="navigation"> <div class="container"> <div class="navbar-header"> <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false"> @@ -66,36 +17,21 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">pfm</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.7</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="">0.6.1</span> </span> </div> <div id="navbar" class="navbar-collapse collapse"> - <ul class="nav navbar-nav"> - <li> - <a href="../index.html"> - <span class="fas fa fas fa-home fa-lg"></span> - - </a> -</li> -<li> + <ul class="nav navbar-nav"><li> <a href="../reference/index.html">Reference</a> </li> - </ul> - - <ul class="nav navbar-nav navbar-right"> - - </ul> - - </div><!--/.nav-collapse --> + </ul><ul class="nav navbar-nav navbar-right"></ul></div><!--/.nav-collapse --> </div><!--/.container --> </div><!--/.navbar --> - </header> - -<div class="row"> + </header><div class="row"> <div class="col-md-9 contents"> <div class="page-header"> <h1>Calculate initial and accumulation PEC soil for a set of metabolites</h1> @@ -104,68 +40,59 @@ </div> <div class="ref-description"> - <p>Calculate initial and accumulation PEC soil for a set of metabolites</p> - </div> - <pre class="usage"><span class='fu'>PEC_soil_mets</span>(<span class='no'>rate</span>, <span class='no'>mw_parent</span>, <span class='no'>mets</span>, <span class='kw'>interval</span> <span class='kw'>=</span> <span class='fl'>365</span>, <span class='no'>...</span>)</pre> - - <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2> - <table class="ref-arguments"> - <colgroup><col class="name" /><col class="desc" /></colgroup> - <tr> - <th>rate</th> - <td><p>Application rate in units specified below</p></td> - </tr> - <tr> - <th>mw_parent</th> - <td><p>The molecular weight of the parent compound</p></td> - </tr> - <tr> - <th>mets</th> - <td><p>A dataframe with metabolite identifiers as rownames + <div id="ref-usage"> + <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">PEC_soil_mets</span><span class="op">(</span><span class="va">rate</span>, <span class="va">mw_parent</span>, <span class="va">mets</span>, interval <span class="op">=</span> <span class="fl">365</span>, <span class="va">...</span><span class="op">)</span></span></code></pre></div> + </div> + + <div id="arguments"> + <h2>Arguments</h2> + <dl><dt>rate</dt> +<dd><p>Application rate in units specified below</p></dd> + + +<dt>mw_parent</dt> +<dd><p>The molecular weight of the parent compound</p></dd> + + +<dt>mets</dt> +<dd><p>A dataframe with metabolite identifiers as rownames and columns "mw", "occ" and "DT50" holding their molecular weight, -maximum occurrence in soil and their soil DT50</p></td> - </tr> - <tr> - <th>interval</th> - <td><p>The interval for accumulation calculations</p></td> - </tr> - <tr> - <th>...</th> - <td><p>Further arguments are passed to PEC_soil</p></td> - </tr> - </table> - +maximum occurrence in soil and their soil DT50</p></dd> - </div> - <div class="col-md-3 hidden-xs hidden-sm" id="sidebar"> - <h2>Contents</h2> - <ul class="nav nav-pills nav-stacked"> - <li><a href="#arguments">Arguments</a></li> - </ul> + +<dt>interval</dt> +<dd><p>The interval for accumulation calculations</p></dd> + + +<dt>...</dt> +<dd><p>Further arguments are passed to PEC_soil</p></dd> + +</dl></div> </div> + <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar"> + <nav id="toc" data-toggle="toc" class="sticky-top"><h2 data-toc-skip>Contents</h2> + </nav></div> </div> - <footer> - <div class="copyright"> - <p>Developed by Johannes Ranke.</p> + <footer><div class="copyright"> + <p></p><p>Developed by Johannes Ranke.</p> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.4.1.</p> + <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p> </div> - 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