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Diffstat (limited to 'docs/reference/pfm_degradation.html')
| -rw-r--r-- | docs/reference/pfm_degradation.html | 30 |
1 files changed, 29 insertions, 1 deletions
diff --git a/docs/reference/pfm_degradation.html b/docs/reference/pfm_degradation.html index b4f3279..22d90ca 100644 --- a/docs/reference/pfm_degradation.html +++ b/docs/reference/pfm_degradation.html @@ -86,13 +86,21 @@ is calculated (SFO model).</p></dd> </dl></div> <div class="section level2"> + <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2> + <p>A data frame containing the output times and the concentrations +assuming initial concentrations of 1 for the parent and zero for +metabolites, if any.</p> + </div> + <div class="section level2"> <h2 id="author">Author<a class="anchor" aria-label="anchor" href="#author"></a></h2> <p>Johannes Ranke</p> </div> <div class="section level2"> <h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2> - <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="fu">pfm_degradation</span><span class="op">(</span><span class="st">"SFO"</span>, DT50 <span class="op">=</span> <span class="fl">10</span><span class="op">)</span><span class="op">)</span></span></span> + <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="co"># Simple example of an SFO decline curve</span></span></span> +<span class="r-in"><span><span class="va">sfo_out</span> <span class="op"><-</span> <span class="fu">pfm_degradation</span><span class="op">(</span><span class="st">"SFO"</span>, DT50 <span class="op">=</span> <span class="fl">10</span><span class="op">)</span></span></span> +<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">sfo_out</span><span class="op">)</span></span></span> <span class="r-out co"><span class="r-pr">#></span> time parent</span> <span class="r-out co"><span class="r-pr">#></span> 0 0 1.0000000</span> <span class="r-out co"><span class="r-pr">#></span> 1 1 0.9330330</span> @@ -100,6 +108,26 @@ is calculated (SFO model).</p></dd> <span class="r-out co"><span class="r-pr">#></span> 3 3 0.8122524</span> <span class="r-out co"><span class="r-pr">#></span> 4 4 0.7578583</span> <span class="r-out co"><span class="r-pr">#></span> 5 5 0.7071068</span> +<span class="r-in"><span></span></span> +<span class="r-in"><span><span class="co"># Fictive example with a metabolite where we first generate an SFO-SFO model</span></span></span> +<span class="r-in"><span><span class="va">sfo_sfo</span> <span class="op"><-</span> <span class="fu"><a href="https://pkgdown.jrwb.de/mkin/reference/mkinmod.html" class="external-link">mkinmod</a></span><span class="op">(</span></span></span> +<span class="r-in"><span> parent <span class="op">=</span> <span class="fu"><a href="https://pkgdown.jrwb.de/mkin/reference/mkinmod.html" class="external-link">mkinsub</a></span><span class="op">(</span><span class="st">"SFO"</span>, to <span class="op">=</span> <span class="st">"metabolite"</span><span class="op">)</span>,</span></span> +<span class="r-in"><span> metabolite <span class="op">=</span> <span class="fu"><a href="https://pkgdown.jrwb.de/mkin/reference/mkinmod.html" class="external-link">mkinsub</a></span><span class="op">(</span><span class="st">"SFO"</span><span class="op">)</span><span class="op">)</span></span></span> +<span class="r-msg co"><span class="r-pr">#></span> Temporary DLL for differentials generated and loaded</span> +<span class="r-in"><span></span></span> +<span class="r-in"><span><span class="va">sfo_sfo_out</span> <span class="op"><-</span> <span class="fu">pfm_degradation</span><span class="op">(</span><span class="va">sfo_sfo</span>,</span></span> +<span class="r-in"><span> parms <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span>k_parent <span class="op">=</span> <span class="fl">0.1</span>, f_parent_to_metabolite <span class="op">=</span> <span class="fl">0.5</span>, k_metabolite <span class="op">=</span> <span class="fl">0.02</span><span class="op">)</span><span class="op">)</span></span></span> +<span class="r-in"><span></span></span> +<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span></span></span> +<span class="r-in"><span> <span class="va">sfo_sfo_out</span><span class="op">[</span>, <span class="st">"time"</span><span class="op">]</span>,</span></span> +<span class="r-in"><span> <span class="va">sfo_sfo_out</span><span class="op">[</span>, <span class="st">"parent"</span><span class="op">]</span>, type <span class="op">=</span> <span class="st">"l"</span>,</span></span> +<span class="r-in"><span> xlab <span class="op">=</span> <span class="st">"Time"</span>, ylab <span class="op">=</span> <span class="st">"Relative concentration"</span>,</span></span> +<span class="r-in"><span> xlim <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">0</span>, <span class="fl">100</span><span class="op">)</span><span class="op">)</span></span></span> +<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/graphics/lines.html" class="external-link">lines</a></span><span class="op">(</span></span></span> +<span class="r-in"><span> <span class="va">sfo_sfo_out</span><span class="op">[</span>, <span class="st">"time"</span><span class="op">]</span>,</span></span> +<span class="r-in"><span> <span class="va">sfo_sfo_out</span><span class="op">[</span>, <span class="st">"metabolite"</span><span class="op">]</span>, lty <span class="op">=</span> <span class="fl">2</span><span class="op">)</span></span></span> +<span class="r-plt img"><img src="pfm_degradation-1.png" alt="" width="700" height="433"></span> +<span class="r-in"><span></span></span> </code></pre></div> </div> </main><aside class="col-md-3"><nav id="toc" aria-label="Table of contents"><h2>On this page</h2> |