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-rw-r--r--docs/reference/PEC_sw_exposit_drainage.html239
-rw-r--r--docs/reference/PEC_sw_exposit_runoff.html26
-rw-r--r--docs/reference/perc_runoff_exposit.html4
-rw-r--r--docs/reference/perc_runoff_reduction_exposit.html6
-rw-r--r--docs/reference/pesticide.txt4
5 files changed, 265 insertions, 14 deletions
diff --git a/docs/reference/PEC_sw_exposit_drainage.html b/docs/reference/PEC_sw_exposit_drainage.html
new file mode 100644
index 0000000..62d83fa
--- /dev/null
+++ b/docs/reference/PEC_sw_exposit_drainage.html
@@ -0,0 +1,239 @@
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+<meta property="og:title" content="Calculate PEC surface water due to drainage as in Exposit 3 — PEC_sw_exposit_drainage" />
+
+<meta property="og:description" content="This is a reimplementation of the calculation described in the Exposit 3.02 spreadsheet file,
+in the worksheet &quot;Konzept Drainage&quot;. Although there are four groups of
+compounds (&quot;Gefährdungsgruppen&quot;), only one distinction is made in the
+calculations, between compounds with low mobility (group 1) and compounds
+with modest to high mobility (groups 2, 3 and 4). In this implementation,
+the group is derived only from the Koc, if not given explicitly. For
+details, see the discussion of the function arguments below." />
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+ <span class="fa fa-github fa-lg"></span>
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+
+<div class="row">
+ <div class="col-md-9 contents">
+ <div class="page-header">
+ <h1>Calculate PEC surface water due to drainage as in Exposit 3</h1>
+ <small class="dont-index">Source: <a href='https://github.com/jranke/pfm/blob/master/R/PEC_sw_exposit_runoff.R'><code>R/PEC_sw_exposit_runoff.R</code></a></small>
+ <div class="hidden name"><code>PEC_sw_exposit_drainage.Rd</code></div>
+ </div>
+
+ <div class="ref-description">
+
+ <p>This is a reimplementation of the calculation described in the Exposit 3.02 spreadsheet file,
+in the worksheet "Konzept Drainage". Although there are four groups of
+compounds ("Gefährdungsgruppen"), only one distinction is made in the
+calculations, between compounds with low mobility (group 1) and compounds
+with modest to high mobility (groups 2, 3 and 4). In this implementation,
+the group is derived only from the Koc, if not given explicitly. For
+details, see the discussion of the function arguments below.</p>
+
+ </div>
+
+ <pre class="usage"><span class='fu'>PEC_sw_exposit_drainage</span>(<span class='no'>rate</span>, <span class='kw'>interception</span> <span class='kw'>=</span> <span class='fl'>0</span>, <span class='kw'>Koc</span> <span class='kw'>=</span> <span class='fl'>NA</span>,
+ <span class='kw'>mobility</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='fl'>NA</span>, <span class='st'>"low"</span>, <span class='st'>"high"</span>), <span class='kw'>DT50</span> <span class='kw'>=</span> <span class='fl'>Inf</span>, <span class='kw'>t_drainage</span> <span class='kw'>=</span> <span class='fl'>3</span>,
+ <span class='kw'>V_ditch</span> <span class='kw'>=</span> <span class='fl'>30</span>, <span class='kw'>V_drainage</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='kw'>spring</span> <span class='kw'>=</span> <span class='fl'>10</span>, <span class='kw'>autumn</span> <span class='kw'>=</span> <span class='fl'>100</span>),
+ <span class='kw'>dilution</span> <span class='kw'>=</span> <span class='fl'>2</span>)</pre>
+
+ <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
+ <table class="ref-arguments">
+ <colgroup><col class="name" /><col class="desc" /></colgroup>
+ <tr>
+ <th>rate</th>
+ <td><p>The application rate in g/ha</p></td>
+ </tr>
+ <tr>
+ <th>interception</th>
+ <td><p>The fraction intercepted by the crop</p></td>
+ </tr>
+ <tr>
+ <th>Koc</th>
+ <td><p>The sorption coefficient to soil organic carbon used to determine the mobility. A trigger
+value of 550 L/kg is used in order to decide if Koc &gt;&gt; 500.</p></td>
+ </tr>
+ <tr>
+ <th>mobility</th>
+ <td><p>Overrides what is determined from the Koc.</p></td>
+ </tr>
+ <tr>
+ <th>DT50</th>
+ <td><p>The soil half-life in days</p></td>
+ </tr>
+ <tr>
+ <th>t_drainage</th>
+ <td><p>The time between application and the drainage event, where degradation occurs, in days</p></td>
+ </tr>
+ <tr>
+ <th>V_ditch</th>
+ <td><p>The volume of the ditch is assumed to be 1 m * 100 m * 30 cm = 30 m3</p></td>
+ </tr>
+ <tr>
+ <th>V_drainage</th>
+ <td><p>The drainage volume, equivalent to 1 mm precipitation on 1 ha for spring/summer or 10 mm for
+autumn/winter/early spring.</p></td>
+ </tr>
+ <tr>
+ <th>dilution</th>
+ <td><p>The dilution factor</p></td>
+ </tr>
+ </table>
+
+ <h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2>
+
+ <p>Excel 3.02 spreadsheet available from
+ <a href='https://www.bvl.bund.de/DE/04_Pflanzenschutzmittel/03_Antragsteller/04_Zulassungsverfahren/07_Naturhaushalt/psm_naturhaush_node.html#doc1400590bodyText3'>https://www.bvl.bund.de/DE/04_Pflanzenschutzmittel/03_Antragsteller/04_Zulassungsverfahren/07_Naturhaushalt/psm_naturhaush_node.html#doc1400590bodyText3</a></p>
+
+ <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
+
+ <p>A list containing the following components</p><dl class='dl-horizontal'>
+ <dt>perc_runoff</dt><dd><p>The runoff percentages for dissolved and bound substance</p></dd>
+ <dt>runoff</dt><dd><p>A matrix containing dissolved and bound input for the different distances</p></dd>
+ <dt>PEC_sw_runoff</dt><dd><p>A matrix containing PEC values for dissolved and bound substance
+ for the different distances. If the rate was given in g/ha, the PECsw are in microg/L.</p></dd>
+ </dl>
+
+
+ <h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
+
+ <div class='dont-index'><p><code><a href='perc_runoff_exposit.html'>perc_runoff_exposit</a></code> for runoff loss percentages and <code><a href='perc_runoff_reduction_exposit.html'>perc_runoff_reduction_exposit</a></code> for runoff reduction percentages used</p></div>
+
+
+ <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
+ <pre class="examples"><div class='input'> <span class='fu'>PEC_sw_exposit_drainage</span>(<span class='fl'>500</span>, <span class='kw'>Koc</span> <span class='kw'>=</span> <span class='fl'>150</span>)</div><div class='output co'>#&gt; $perc_drainage_total
+#&gt; spring autumn
+#&gt; 0.2 1.0
+#&gt;
+#&gt; $perc_peak
+#&gt; spring autumn
+#&gt; 12.5 25.0
+#&gt;
+#&gt; $PEC_sw_drainage
+#&gt; spring autumn
+#&gt; 1.562500 4.807692
+#&gt; </div></pre>
+ </div>
+ <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
+ <h2>Contents</h2>
+ <ul class="nav nav-pills nav-stacked">
+ <li><a href="#arguments">Arguments</a></li>
+
+ <li><a href="#source">Source</a></li>
+
+ <li><a href="#value">Value</a></li>
+
+ <li><a href="#see-also">See also</a></li>
+
+ <li><a href="#examples">Examples</a></li>
+ </ul>
+
+ </div>
+</div>
+
+ <footer>
+ <div class="copyright">
+ <p>Developed by Johannes Ranke.</p>
+</div>
+
+<div class="pkgdown">
+ <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
+</div>
+ </footer>
+ </div>
+
+
+
+ </body>
+</html>
+
diff --git a/docs/reference/PEC_sw_exposit_runoff.html b/docs/reference/PEC_sw_exposit_runoff.html
index f86ad1e..3d7097a 100644
--- a/docs/reference/PEC_sw_exposit_runoff.html
+++ b/docs/reference/PEC_sw_exposit_runoff.html
@@ -32,8 +32,8 @@
<meta property="og:title" content="Calculate PEC surface water due to runoff and erosion as in Exposit 3 — PEC_sw_exposit_runoff" />
-<meta property="og:description" content="This is a reimplementation of the calculation described in the Exposit 3.01 spreadsheet file,
-in the worksheet &quot;Konzept Runoff&quot;. Calculation of sediment PEC values is not implemented." />
+<meta property="og:description" content="This is a reimplementation of the calculation described in the Exposit 3.02 spreadsheet file,
+in the worksheet &quot;Konzept Runoff&quot;." />
<meta name="twitter:card" content="summary" />
@@ -107,14 +107,14 @@ in the worksheet &quot;Konzept Runoff&quot;. Calculation of sediment PEC values
<div class="ref-description">
- <p>This is a reimplementation of the calculation described in the Exposit 3.01 spreadsheet file,
-in the worksheet "Konzept Runoff". Calculation of sediment PEC values is not implemented.</p>
+ <p>This is a reimplementation of the calculation described in the Exposit 3.02 spreadsheet file,
+in the worksheet "Konzept Runoff".</p>
</div>
- <pre class="usage"><span class='fu'>PEC_sw_exposit_runoff</span>(<span class='no'>rate</span>, <span class='no'>Koc</span>, <span class='kw'>DT50</span> <span class='kw'>=</span> <span class='fl'>Inf</span>, <span class='kw'>t_runoff</span> <span class='kw'>=</span> <span class='fl'>3</span>,
- <span class='kw'>exposit_reduction_version</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='st'>"3.01"</span>, <span class='st'>"2.0"</span>), <span class='kw'>V_ditch</span> <span class='kw'>=</span> <span class='fl'>30</span>,
- <span class='kw'>V_event</span> <span class='kw'>=</span> <span class='fl'>100</span>)</pre>
+ <pre class="usage"><span class='fu'>PEC_sw_exposit_runoff</span>(<span class='no'>rate</span>, <span class='kw'>interception</span> <span class='kw'>=</span> <span class='fl'>0</span>, <span class='no'>Koc</span>, <span class='kw'>DT50</span> <span class='kw'>=</span> <span class='fl'>Inf</span>,
+ <span class='kw'>t_runoff</span> <span class='kw'>=</span> <span class='fl'>3</span>, <span class='kw'>exposit_reduction_version</span> <span class='kw'>=</span> <span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/c'>c</a></span>(<span class='st'>"3.02"</span>, <span class='st'>"2.0"</span>),
+ <span class='kw'>V_ditch</span> <span class='kw'>=</span> <span class='fl'>30</span>, <span class='kw'>V_event</span> <span class='kw'>=</span> <span class='fl'>100</span>, <span class='kw'>dilution</span> <span class='kw'>=</span> <span class='fl'>2</span>)</pre>
<h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
<table class="ref-arguments">
@@ -124,6 +124,10 @@ in the worksheet "Konzept Runoff". Calculation of sediment PEC values is not imp
<td><p>The application rate in g/ha</p></td>
</tr>
<tr>
+ <th>interception</th>
+ <td><p>The fraction intercepted by the crop</p></td>
+ </tr>
+ <tr>
<th>Koc</th>
<td><p>The sorption coefficient to soil organic carbon</p></td>
</tr>
@@ -147,11 +151,15 @@ in the worksheet "Konzept Runoff". Calculation of sediment PEC values is not imp
<th>V_event</th>
<td><p>The unreduced runoff volume, equivalent to 10 mm precipitation on 1 ha</p></td>
</tr>
+ <tr>
+ <th>dilution</th>
+ <td><p>The dilution factor</p></td>
+ </tr>
</table>
<h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2>
- <p>Excel 3.01 spreadsheet available from
+ <p>Excel 3.02 spreadsheet available from
<a href='https://www.bvl.bund.de/DE/04_Pflanzenschutzmittel/03_Antragsteller/04_Zulassungsverfahren/07_Naturhaushalt/psm_naturhaush_node.html#doc1400590bodyText3'>https://www.bvl.bund.de/DE/04_Pflanzenschutzmittel/03_Antragsteller/04_Zulassungsverfahren/07_Naturhaushalt/psm_naturhaush_node.html#doc1400590bodyText3</a></p>
<h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
@@ -170,7 +178,7 @@ in the worksheet "Konzept Runoff". Calculation of sediment PEC values is not imp
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
- <pre class="examples"><div class='input'> <span class='fu'>PEC_sw_exposit_runoff</span>(<span class='fl'>500</span>, <span class='fl'>150</span>)</div><div class='output co'>#&gt; $perc_runoff
+ <pre class="examples"><div class='input'> <span class='fu'>PEC_sw_exposit_runoff</span>(<span class='fl'>500</span>, <span class='kw'>Koc</span> <span class='kw'>=</span> <span class='fl'>150</span>)</div><div class='output co'>#&gt; $perc_runoff
#&gt; dissolved bound
#&gt; 0.248 0.001
#&gt;
diff --git a/docs/reference/perc_runoff_exposit.html b/docs/reference/perc_runoff_exposit.html
index e600a1c..737dbb5 100644
--- a/docs/reference/perc_runoff_exposit.html
+++ b/docs/reference/perc_runoff_exposit.html
@@ -124,8 +124,8 @@
<h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2>
- <p>Excel 3.01 spreadsheet available from
- <a href='https://www.bvl.bund.de/DE/04_Pflanzenschutzmittel/03_Antragsteller/04_Zulassungsverfahren/07_Naturhaushalt/psm_naturhaush_node.html#doc1400590bodyText3'>https://www.bvl.bund.de/DE/04_Pflanzenschutzmittel/03_Antragsteller/04_Zulassungsverfahren/07_Naturhaushalt/psm_naturhaush_node.html#doc1400590bodyText3</a></p>
+ <p>Excel 3.02 spreadsheet available from
+ <a href='https://www.bvl.bund.de/EN/04_PlantProtectionProducts/03_Applicants/04_AuthorisationProcedure/08_Environment/ppp_environment_node.html'>https://www.bvl.bund.de/EN/04_PlantProtectionProducts/03_Applicants/04_AuthorisationProcedure/08_Environment/ppp_environment_node.html</a></p>
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
diff --git a/docs/reference/perc_runoff_reduction_exposit.html b/docs/reference/perc_runoff_reduction_exposit.html
index 9170b37..818e2be 100644
--- a/docs/reference/perc_runoff_reduction_exposit.html
+++ b/docs/reference/perc_runoff_reduction_exposit.html
@@ -124,12 +124,12 @@ from which the values were taken.</p><dl class='dl-horizontal'>
<h2 class="hasAnchor" id="source"><a class="anchor" href="#source"></a>Source</h2>
- <p>Excel 3.01 spreadsheet available from
- <a href='https://www.bvl.bund.de/DE/04_Pflanzenschutzmittel/03_Antragsteller/04_Zulassungsverfahren/07_Naturhaushalt/psm_naturhaush_node.html#doc1400590bodyText3'>https://www.bvl.bund.de/DE/04_Pflanzenschutzmittel/03_Antragsteller/04_Zulassungsverfahren/07_Naturhaushalt/psm_naturhaush_node.html#doc1400590bodyText3</a></p>
+ <p>Excel 3.02 spreadsheet available from
+ <a href='https://www.bvl.bund.de/EN/04_PlantProtectionProducts/03_Applicants/04_AuthorisationProcedure/08_Environment/ppp_environment_node.html'>https://www.bvl.bund.de/EN/04_PlantProtectionProducts/03_Applicants/04_AuthorisationProcedure/08_Environment/ppp_environment_node.html</a></p>
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
- <pre class="examples"><div class='input'><span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/print'>print</a></span>(<span class='no'>perc_runoff_reduction_exposit</span>)</div><div class='output co'>#&gt; $`3.01`
+ <pre class="examples"><div class='input'><span class='fu'><a href='https://www.rdocumentation.org/packages/base/topics/print'>print</a></span>(<span class='no'>perc_runoff_reduction_exposit</span>)</div><div class='output co'>#&gt; $`3.02`
#&gt; dissolved bound
#&gt; No buffer 0 0
#&gt; 5 m 40 40
diff --git a/docs/reference/pesticide.txt b/docs/reference/pesticide.txt
index 38d58ba..20f4237 100644
--- a/docs/reference/pesticide.txt
+++ b/docs/reference/pesticide.txt
@@ -47,3 +47,7 @@ Dummy 1 cereals, spring n NA Dummy 1 cereals, spring n NA -99.00 -99.00 60
M1 cereals, winter n NA M1 cereals, winter n NA 250.00 100.00 100.00 50.00 100.00 100.00 0.00E+00 50.00 1000.00 1.00 0.00E+00 1.00 -99.00 -99.00 -99.00 -99.00 0.00E+00 1.00
Dummy 1 cereals, spring n NA Dummy 1 cereals, spring n NA -99.00 -99.00 6000.00 344.80 0.00E+00 6.00 0.00E+00 0.00E+00 3000.00 1.00 0.00E+00 0.00E+00 0.00E+00 -99.00 -99.00 -99.00 0.00E+00 1.00
M1 cereals, winter n NA M1 cereals, winter n NA 250.00 100.00 100.00 50.00 100.00 100.00 0.00E+00 50.00 1000.00 1.00 0.00E+00 1.00 -99.00 -99.00 -99.00 -99.00 0.00E+00 1.00
+Dummy 1 cereals, spring n NA Dummy 1 cereals, spring n NA -99.00 -99.00 6000.00 344.80 0.00E+00 6.00 0.00E+00 0.00E+00 3000.00 1.00 0.00E+00 0.00E+00 0.00E+00 -99.00 -99.00 -99.00 0.00E+00 1.00
+M1 cereals, winter n NA M1 cereals, winter n NA 250.00 100.00 100.00 50.00 100.00 100.00 0.00E+00 50.00 1000.00 1.00 0.00E+00 1.00 -99.00 -99.00 -99.00 -99.00 0.00E+00 1.00
+Dummy 1 cereals, spring n NA Dummy 1 cereals, spring n NA -99.00 -99.00 6000.00 344.80 0.00E+00 6.00 0.00E+00 0.00E+00 3000.00 1.00 0.00E+00 0.00E+00 0.00E+00 -99.00 -99.00 -99.00 0.00E+00 1.00
+M1 cereals, winter n NA M1 cereals, winter n NA 250.00 100.00 100.00 50.00 100.00 100.00 0.00E+00 50.00 1000.00 1.00 0.00E+00 1.00 -99.00 -99.00 -99.00 -99.00 0.00E+00 1.00

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