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diff --git a/pkg/inst/web/GUS.html b/pkg/inst/web/GUS.html deleted file mode 100644 index a330be2..0000000 --- a/pkg/inst/web/GUS.html +++ /dev/null @@ -1,160 +0,0 @@ -<!DOCTYPE html> -<html lang="en"> - <head> - <meta charset="utf-8"> -<title>GUS. pfm 0.3-7</title> -<meta name="viewport" content="width=device-width, initial-scale=1.0"> -<meta name="author" content=" -Johannes Ranke -"> - -<link href="css/bootstrap.css" rel="stylesheet"> -<link href="css/bootstrap-responsive.css" rel="stylesheet"> -<link href="css/highlight.css" rel="stylesheet"> -<link href="css/staticdocs.css" rel="stylesheet"> - -<!--[if lt IE 9]> - <script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script> -<![endif]--> - -<script type="text/x-mathjax-config"> - MathJax.Hub.Config({ - tex2jax: { - inlineMath: [ ['$','$'], ["\\(","\\)"] ], - processEscapes: true - } - }); -</script> -<script type="text/javascript" - src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"> -</script> - </head> - - <body> - <div class="navbar"> - <div class="navbar-inner"> - <div class="container"> - <a class="brand" href="#">pfm 0.3-7</a> - <div class="nav"> - <ul class="nav"> - <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> - </ul> - </div> - </div> - </div> -</div> - - <div class="container"> - <header> - - </header> - - <h1>Groundwater ubiquity score based on Gustafson (1989)</h1> - -<div class="row"> - <div class="span8"> - <h2>Usage</h2> - <pre><div>GUS(...)</div> -<div>"GUS"(DT50, Koc, ...)</div> -<div>"GUS"(chent, degradation_value = "DT50ref", lab_field = "laboratory", redox = "aerobic", sorption_value = "Kfoc", degradation_aggregator = geomean, sorption_aggregator = geomean, ...)</div> -<div>"print"(x, ..., digits = 1)</div></pre> - - <h2>Arguments</h2> - <dl> - <dt>...</dt> - <dd>Included in the generic to allow for further arguments later. Therefore -this also had to be added to the specific methods.</dd> - <dt>DT50</dt> - <dd>Half-life of the chemical in soil. Should be a field -half-life according to Gustafson (1989). However, leaching to the sub-soil -can not completely be excluded in field dissipation experiments and Gustafson -did not refer to any normalisation procedure, but says the field study should -be conducted under use conditions.</dd> - <dt>Koc</dt> - <dd>The sorption constant normalised to organic carbon. Gustafson -does not mention the nonlinearity of the sorption constant commonly -found and usually described by Freundlich sorption, therefore it is -unclear at which reference concentration the Koc should be observed -(and if the reference concentration would be in soil or in porewater).</dd> - <dt>chent</dt> - <dd>If a chent is given with appropriate information present in its -chyaml field, this information is used, with defaults specified below.</dd> - <dt>degradation_value</dt> - <dd>Which of the available degradation values should -be used?</dd> - <dt>lab_field</dt> - <dd>Should laboratory or field half-lives be used? This -defaults to lab in this implementation, in order to avoid -double-accounting for mobility. If comparability with the original GUS -values given by Gustafson (1989) is desired, non-normalised first-order -field half-lives obtained under actual use conditions should be used.</dd> - <dt>redox</dt> - <dd>Aerobic or anaerobic degradation data</dd> - <dt>sorption_value</dt> - <dd>Which of the available sorption values should be used? -Defaults to Kfoc as this is what is generally available from the European -pesticide peer review process. These values generally use a reference -concentration of 1 mg/L in porewater, that means they would be expected to -be Koc values at a concentration of 1 mg/L in the water phase.</dd> - <dt>degradation_aggregator</dt> - <dd>Function for aggregating half-lives</dd> - <dt>sorption_aggregator</dt> - <dd>Function for aggregation Koc values</dd> - <dt>x</dt> - <dd>An object of class GUS_result to be printed</dd> - <dt>digits</dt> - <dd>The number of digits used in the print method</dd> - </dl> - - <div class="Value"> - <h2>Value</h2> - - <p><dl> -A list with the DT50 and Koc used as well as the resulting score - of class GUS_result -</dl></p> - - </div> - - <div class="Description"> - <h2>Description</h2> - - <p>The groundwater ubiquity score GUS is calculated according to -the following equation -$$GUS = \log_{10} DT50_{soil} (4 - \log_{10} K_{oc})$$</p> - - </div> - - <div class="References"> - <h2>References</h2> - - <p>Gustafson, David I. (1989) Groundwater ubiquity score: a simple -method for assessing pesticide leachability. <em>Environmental -toxicology and chemistry</em> <b>8</b>(4) 339–57.</p> - - </div> - </div> - <div class="span4"> - <!-- <ul> - <li>GUS</li><li>GUS.chent</li><li>GUS.numeric</li><li>print.GUS_result</li> - </ul> - <ul> - - </ul> --> - - - <h2>Author</h2> - -Johannes Ranke - - - </div> -</div> - - <footer> - <p class="pull-right"><a href="#">Back to top</a></p> -<p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. Styled with <a href="http://twitter.github.com/bootstrap">bootstrap</a>.</p> - </footer> - </div> - </body> -</html>
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