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diff --git a/pkg/inst/web/pfm_degradation.html b/pkg/inst/web/pfm_degradation.html new file mode 100644 index 0000000..68e8859 --- /dev/null +++ b/pkg/inst/web/pfm_degradation.html @@ -0,0 +1,119 @@ +<!DOCTYPE html> +<html lang="en"> + <head> + <meta charset="utf-8"> +<title>pfm_degradation. pfm 0.3-1</title> +<meta name="viewport" content="width=device-width, initial-scale=1.0"> +<meta name="author" content=" +Johannes Ranke +"> + +<link href="css/bootstrap.css" rel="stylesheet"> +<link href="css/bootstrap-responsive.css" rel="stylesheet"> +<link href="css/highlight.css" rel="stylesheet"> +<link href="css/staticdocs.css" rel="stylesheet"> + +<!--[if lt IE 9]> + <script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script> +<![endif]--> + +<script type="text/x-mathjax-config"> + MathJax.Hub.Config({ + tex2jax: { + inlineMath: [ ['$','$'], ["\\(","\\)"] ], + processEscapes: true + } + }); +</script> +<script type="text/javascript" + src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"> +</script> + </head> + + <body> + <div class="navbar"> + <div class="navbar-inner"> + <div class="container"> + <a class="brand" href="#">pfm 0.3-1</a> + <div class="nav"> + <ul class="nav"> + <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li> + </ul> + </div> + </div> + </div> +</div> + + <div class="container"> + <header> + + </header> + + <h1>Calculate a time course of relative concentrations based on an mkinmod model</h1> + +<div class="row"> + <div class="span8"> + <h2>Usage</h2> + <pre><div>pfm_degradation(model = "SFO", DT50 = 1000, parms = c(k_parent_sink = log(2)/DT50), years = 1, step_days = 1, times = seq(0, years * 365, by = step_days))</div></pre> + + <h2>Arguments</h2> + <dl> + <dt>model</dt> + <dd>The degradation model to be used. Either a parent only model like +'SFO' or 'FOMC', or an mkinmod object</dd> + <dt>DT50</dt> + <dd>The half-life. This is only used when simple exponential decline +is calculated (SFO model).</dd> + <dt>parms</dt> + <dd>The parameters used for the degradation model</dd> + <dt>years</dt> + <dd>For how many years should the degradation be predicted?</dd> + <dt>step_days</dt> + <dd>What step size in days should the output have?</dd> + <dt>times</dt> + <dd>The output times</dd> + </dl> + + <div class="Description"> + <h2>Description</h2> + + <p>Calculate a time course of relative concentrations based on an mkinmod model</p> + + </div> + + <h2 id="examples">Examples</h2> + <pre class="examples"><div class='input'>head(pfm_degradation("SFO", DT50 = 10)) +</div> +<div class='output'> time parent +1 0 1.0000000 +2 1 0.9330330 +3 2 0.8705506 +4 3 0.8122524 +5 4 0.7578583 +6 5 0.7071068 +</div></pre> + </div> + <div class="span4"> + <!-- <ul> + <li>pfm_degradation</li> + </ul> + <ul> + + </ul> --> + + + <h2>Author</h2> + +Johannes Ranke + + + </div> +</div> + + <footer> + <p class="pull-right"><a href="#">Back to top</a></p> +<p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. Styled with <a href="http://twitter.github.com/bootstrap">bootstrap</a>.</p> + </footer> + </div> + </body> +</html>
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