1 files changed, 0 insertions, 86 deletions
diff --git a/tests/testthat/test_set_nd.R b/tests/testthat/test_set_nd.R
deleted file mode 100644
index 232e7c6..0000000
--- a/tests/testthat/test_set_nd.R
+++ /dev/null
@@ -1,86 +0,0 @@
-context("Processing of residue series")
-
-# FOCUS (2014) page 76 (parent) and page 132 (metabolite)
-
-parent_1 <- c(.12, .09, .05, .03, "nd", "nd", "nd", "nd", "nd", "nd")
-parent_2 <- c(.12, .09, .05, .03, "nd", "nd", .03, "nd", "nd", "nd")
-parent_3 <- c(.12, .09, .05, .03, "nd", "nd", .06, "nd", "nd", "nd")
-metabolite <- c("nd", "nd", "nd", 0.03, 0.06, 0.10, 0.11, 0.10, 0.09, 0.05, 0.03, "nd", "nd")
-
-test_that("Simple residue series are processed as intended", {
-
-  expect_equal(set_nd_nq(parent_1, 0.02),
-    c(.12, .09, .05, .03, .01, rep(NA, 5)))
-
-  expect_equal(set_nd_nq(parent_2, 0.02, loq = 0.05),
-    c(.12, .09, .05, .03, .01, .01, .03, .01, NA, NA))
-
-  expect_equal(set_nd_nq(metabolite, 0.02, loq = 0.05),
-    c(NA, NA, .01, .03, .06, .1, .11, .1, .09, .05, .03, .01, NA))
-
-  expect_equal(set_nd_nq(c("nd", 1, 0.2, "nd"), 0.1),
-    c(NA, 1, 0.2, 0.05))
-
-})
-
-test_that("Simple residue series are processed as in the FOCUS guidance", {
-
-  # Parent 1
-  expect_error(set_nd_nq_focus(parent_1, 0.02),
-    "You need to specify an LOQ")
-  expect_equal(set_nd_nq_focus(parent_1, 0.02, 0.05),
-    c(.12, .09, .05, .03, .01, rep(NA, 5)))
-
-  # Parent 2
-  expect_equal(set_nd_nq_focus(parent_2, 0.02, loq = 0.05),
-    c(.12, .09, .05, .03, .01, rep(NA, 5)))
-
-  # Parent 3
-  expect_equal(set_nd_nq_focus(parent_3, 0.02, loq = 0.05),
-    c(.12, .09, .05, .03, .01, .01, .06, .01, NA, NA))
-
-  # Metabolite
-  expect_equal(set_nd_nq_focus(metabolite, 0.02, loq = 0.05),
-    c(0, NA, .01, .03, .06, .1, .11, .1, .09, .05, .03, .01, NA))
-
-})
-
-test_that("Examples Boesten et al. (2015, p. 57/58) are correctly processed", {
-  table_8 <- matrix(
-    c(10, 10, rep("nd", 4),
-      10, 10, rep("nq", 2), rep("nd", 2),
-      10, 10, 10, "nq", "nd", "nd",
-      "nq", 10, "nq", rep("nd", 3),
-      "nd", "nq", "nq", rep("nd", 3),
-      rep("nd", 6), rep("nd", 6)),
-    ncol = 6, byrow = TRUE)
-  table_8_processed <- set_nd_nq(table_8, 0.5, 1.5, time_zero_presence = TRUE)
-  table_9 <- matrix(
-    c(10, 10, 0.25, 0.25, NA, NA,
-      10, 10, 1, 1, 0.25, NA,
-      10, 10, 10, 1, 0.25, NA,
-      1, 10, 1, 0.25, NA, NA,
-      0.25, 1, 1, 0.25, NA, NA,
-      NA, 0.25, 0.25, NA, NA, NA,
-      rep(NA, 6)),
-    ncol = 6, byrow = TRUE)
-  expect_equal(table_8_processed, table_9)
-
-  table_10 <- matrix(
-    c(10, 10, rep("nd", 4),
-      10, 10, rep("nd", 4),
-      10, 10, 10, rep("nd", 3),
-      "nd", 10, rep("nd", 4),
-      rep("nd", 18)),
-    ncol = 6, byrow = TRUE)
-  table_10_processed <- set_nd_nq(table_10, 0.5, time_zero_presence = TRUE)
-  table_11 <- matrix(
-    c(10, 10, 0.25, rep(NA, 3),
-      10, 10, 0.25, rep(NA, 3),
-      10, 10, 10, 0.25, NA, NA,
-      0.25, 10, 0.25, rep(NA, 3),
-      NA, 0.25, rep(NA, 4),
-      rep(NA, 12)),
-    ncol = 6, byrow = TRUE)
-  expect_equal(table_10_processed, table_11)
-})