| Age | Commit message (Collapse) | Author | Files | Lines | |
|---|---|---|---|---|---|
| 2017-06-22 | Add scenario, region and season to run name | Johannes Ranke | 1 | -4/+11 | |
| 2017-06-20 | Possibility to turn off formation in water | Johannes Ranke | 1 | -2/+11 | |
| This makes it possible to compare the Step 1 output with earlier versions of the Steps 12 tool. | |||||
| 2017-06-20 | Fix line endings and allow all interception classes | Johannes Ranke | 1 | -2/+4 | |
| 2017-06-20 | Fix generation of input files | Johannes Ranke | 1 | -18/+21 | |
| - Write header only if not appending - Write max_soil and max_ws for metabolites - Formatting | |||||
| 2017-06-19 | Single line of generated Step12 input file partially validated | Johannes Ranke | 1 | -39/+122 | |
| 2017-06-17 | Start with the generation of an input file | Johannes Ranke | 1 | -3/+56 | |
| 2017-05-24 | Fix for the sawtooth function for repeated applications | Johannes Ranke | 1 | -1/+1 | |
| For n > 2, the second application was made at 2 * i instead of i. | |||||
| 2017-05-24 | Re-enable PELMO examples and tests | Johannes Ranke | 1 | -3/+0 | |
| - Add .gitattributes to make sure CRLF line endings are kept for PELMO .psm files - Update static docs | |||||
| 2017-05-17 | Documentation fix | Johannes Ranke | 1 | -2/+2 | |
| 2017-05-16 | Add TWA concentrations for days > 1, fix link | Johannes Ranke | 2 | -8/+25 | |
| Now we have seven test calculations for the Step 1 calculator, all perfectly passing. This provides confidence that this is a correct reimplementation of the Step 1 part of the Step 1/2 calculator. | |||||
| 2017-05-16 | Finish the Step 1 calculator including tests | Johannes Ranke | 4 | -27/+113 | |
| Some cleaning up. PELMO facilities do not currently work at my end, as I have no working wine installation on this computer | |||||
| 2017-05-15 | Start of an Steps 1/2 calculator in R | Johannes Ranke | 2 | -0/+146 | |
| 2017-03-29 | Make it possible to use expressions in axis labels | Johannes Ranke | 1 | -2/+2 | |
| 2017-01-31 | Small documentation fix | Johannes Ranke | 1 | -1/+1 | |
| 2017-01-30 | Correct psm file in the example with metabolites | Johannes Ranke | 1 | -4/+26 | |
| 2017-01-30 | Test reproducing the FOCUS Summary information | Johannes Ranke | 1 | -26/+56 | |
| generated from the FOCUS PELMO GUI, as copied into the text files in the testdata directory. | |||||
| 2017-01-30 | Better documentation of PELMO_runs(). | Johannes Ranke | 1 | -4/+6 | |
| 2017-01-29 | Setting up PELMO runs, execution and evaluation | Johannes Ranke | 2 | -29/+148 | |
| It all works! | |||||
| 2017-01-27 | Also test run with metabolites | Johannes Ranke | 1 | -2/+3 | |
| 2017-01-27 | Set up FOCUS PELMO runs and run them in parallel | Johannes Ranke | 3 | -2/+446 | |
| - This works on Linux using wine - PELMO runs (including pelmo.inp files) are correctly generated - The PLM files for FOCUS Pesticide_D in the test data archive are correctly reproduced - The data files (including FOCUS groundwater scenario data) are now created and documented in R files | |||||
| 2017-01-19 | Another correction of the docs | Johannes Ranke | 1 | -5/+5 | |
| 2017-01-19 | Corrections in the documentation | Johannes Ranke | 1 | -10/+16 | |
| 2017-01-19 | Correct default y axis label for plot.one_box | Johannes Ranke | 1 | -1/+1 | |
| 2017-01-19 | Fix one_box for ini = 1, use in sawtooth examples | Johannes Ranke | 1 | -6/+5 | |
| 2017-01-19 | Move mkin::twa to pfm::max_twa.mkinfit | Johannes Ranke | 1 | -7/+81 | |
| - Add max_twa.mkinfit() recently introduced to mkin as mkin::twa() but never released with it - Add a test to check max_twa.one_box() against analytical solutions in max_twa.mkinfit(). - Clean up R CMD check - Update docs | |||||
| 2017-01-19 | Make max_twa() a bit safer | Johannes Ranke | 1 | -3/+13 | |
| 2017-01-19 | Documentation updates | Johannes Ranke | 1 | -4/+3 | |
| 2017-01-19 | Fix order of arguments to one_box, correct docs | Johannes Ranke | 1 | -7/+8 | |
| 2017-01-19 | Predict parent decline without fitting for non-SFO models | Johannes Ranke | 1 | -3/+37 | |
| 2017-01-19 | Switch sawtooth plotting example to FOMC | Johannes Ranke | 1 | -8/+11 | |
| as this it is claimed in the README that an mkinfit prediction is used. - Add another seealso link - Delete trailing whitespace | |||||
| 2017-01-18 | Update static docs using pkgdown | Johannes Ranke | 1 | -5/+5 | |
| - Add _pkgdown.yml for a structured function/data reference - Make seealso links active - Make mkinfit calls quiet - Use pkgdown branch from pull request hadley/pkgdown#229 to have topics ordered | |||||
| 2017-01-18 | One box time series and twa values | Johannes Ranke | 1 | -0/+220 | |
| - one_box() creates decline time series from mkinfit objects or simply from a half-life - sawtooth() generates sawtooth curves for arbitrary application patterns and decline models - twa() calculates moving window averages - max_twa() gives their maxima and - plot.one_box() can plot series generated by one_box() or sawtooth(), optionally adding a greay rectangle to illustrate the maximum moving window time weighted average | |||||
| 2016-12-22 | Fix reading in times from .out files | Johannes Ranke | 1 | -7/+10 | |
| The code from the previous commit was broken. Also, the time zone for the times that are read is now wet to 'UTC', in order to avoid setting different time zones due to daylight savings, which introduces artificial one-hour offsets on changeover days. | |||||
| 2016-12-14 | Set time correctly for 00:00 hours in .out file | Johannes Ranke | 1 | -5/+10 | |
| For ConLiqWatLayCur_xxxxx entries which are output at 00:00 (midnight), no time is listed in the .out file for this time. This commit introduces a workaround, setting the time to 00:00 when there is no time information. | |||||
| 2016-12-12 | Fix reading .out for acronyms containing numbers | Johannes Ranke | 1 | -1/+1 | |
| 2016-09-27 | Reorganise repository using standard package layout | Johannes Ranke | 14 | -0/+1242 | |
 |
index : pfm | |
| Utilities for pesticide fate modelling (also on github) | Johannes Ranke |
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