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2024-08-26Merge branch 'main' into crop_groupJohannes Ranke3-31/+70
2024-08-13Support units in drift, runoff und sediment PECsRanke Johannes3-31/+70
2024-04-10Improve docs, fail with erroneus crop_group argumentsJohannes Ranke2-26/+32
PEC_sw_drift: The argument 'crop_group_focus' was renamed to 'crop_group_RF' to make it easier to understand the relation to the 'drift_data' argument.
2024-03-07Generalise PEC_sw_driftRanke Johannes1-5/+26
- Possibility to use FOCUS drift values (mean over width of waterbody) - Support side angles other than 90°, i.e. 45° (0° to 90°)
2024-02-01Improve formattingRanke Johannes1-6/+9
2024-02-01Extend drift percentage calcs with FOCUS methodRanke Johannes2-13/+56
2024-02-01TypoRanke Johannes1-1/+1
2024-02-01Improve docsRanke Johannes2-1/+5
2024-02-01Calculate drift percentages and PECsw using the Rautmann formulaRanke Johannes2-15/+57
2024-01-31Drift curve parameters from FOCUS SW Appendix BRanke Johannes2-3/+30
2024-01-31Reorganise data generationRanke Johannes6-168/+23
- Use inst/data_generation for R code generating data as in some of my other packages - data/*.RData files were checked using https://github.com/jranke/dotfiles/blob/main/bin/rda_diff contents were not changed - Remove ChangeLog, the history is in the git logs - Update docs and some links contained therein - use \doi{} markup - Move logs to log directory
2024-01-31Do not write a Step 1/2 txt file by defaultRanke Johannes1-35/+36
2022-11-11Remove Remotes: field from DESCRIPTIONJohannes Ranke1-1/+2
It causes trouble with remotes::install_deps() on travis, see the various previous build logs.
2022-11-11Typo, remove PELMO related suggestionsJohannes Ranke1-1/+1
PELMO related functions are not used in pfm, so apart from advertising, these suggestions did not do anything.
2022-11-10set_nd_nq is now in mkin, fix Steps12 bugJohannes Ranke3-173/+15
If a scenario with a slash "/" was selected in PEC_sw_focus(), the Step 2 file generated giving an error (path not found) in the Steps12 calculator, because the scenario name is part of the "compound" name in this implementation, in order to show it in the list that the calculator presents.
2021-02-10Treat Kfoc = 0 like Exposit in runoff calcsJohannes Ranke1-1/+2
2020-07-23PEC_sw_drift: Rautmann formula (1 app, Ackerbau)Johannes Ranke1-11/+32
This makes it possible to calculate drift PECsw for other distances than present in the JKI data or the Rautmann paper.
2020-07-23Update docs, use R6 support of roxygenJohannes Ranke4-28/+37
2020-07-07Remove copyright headers, update TOXSWA_cwa testJohannes Ranke11-192/+5
- The window column of the windows component of a TOXSWA_cwa object is not a factor any more, but a character vector. - testthat::expect_equal_to_reference is replaced by testthat::expect_known_output, so we can have git diff show what has changed
2020-07-07Adapt pfm_degradation to current mkinJohannes Ranke1-24/+7
use_of_ff = "max" is now the default
2020-06-17TSCF estimation equations, update docsJohannes Ranke1-0/+31
Briggs et al. (1982) and Dettenmaier et al. (2009)
2020-04-16Make na.rm = FALSE the default for geomean()Johannes Ranke1-5/+6
This makes more sense and is in line with mean() from base R. Adapt tests and update docs.
2019-10-23Fix static docs for set_nd_nqJohannes Ranke1-2/+2
2019-10-15Residue processing for depth profiles over timeJohannes Ranke2-118/+164
2019-10-10Do not mess with zero values at time zeroJohannes Ranke1-20/+25
2019-10-10Fix set_nd for metabolites, handle zero at time zeroJohannes Ranke1-5/+5
2019-10-10Fix documentation for set_ndJohannes Ranke1-3/+7
2019-10-10Finish documentation of set_nd and test itJohannes Ranke1-2/+4
2019-10-09Function to set non-detects in residue seriesJohannes Ranke1-0/+107
2019-09-27Fix for UK drainage, some EFSA interception and washoffJohannes Ranke4-4/+104
- PEC_sw_drainage_UK() gave results that were a little bit too high for the substances with the highest Koc (>4000), as I used 0.01% instead of 0.008% for them. This must have come from an old vesion of the UK data requirements handbook, at least I do not have another explanation - Add EFSA interception (from 2014 DegT50 guidance) and tier 1 crop wash-off factors (from 2017 PEC soil guidance) for some major arable crops - Update docs
2019-07-01TypoJohannes Ranke1-1/+1
2019-06-12Documentation fixJohannes Ranke1-3/+2
2019-05-14Add Exposit version 3.01a2 for runoff calculationsJohannes Ranke1-5/+11
At the request of Muris Korkaric (Agroscope). This is for 3 m buffer only and provides consistency with earlier calculations
2019-04-29Additional runoff data used by AgroscopeJohannes Ranke1-2/+12
2019-04-26Formatting improvement for the online docsJohannes Ranke1-0/+1
2019-04-26Another take on completing the drift dataJohannes Ranke1-11/+53
The R script I used yesterday got lost because I used the .Rd file that got overwritten by roxygen later.
2019-02-19Stop endless appending to pesticide.txt exampleJohannes Ranke1-1/+1
2019-02-19Add German drainage calculations using Exposit 3.02Johannes Ranke1-15/+90
2019-02-08Make SSLRC and PEC drainage UK accept NA for KocJohannes Ranke1-7/+11
2019-01-31Separate out PELMO utilities into rPELMOJohannes Ranke2-571/+0
2019-01-30Convenience function for metabolite PEC soilJohannes Ranke1-14/+79
2018-09-27Create valid Step 1 files with fewer argumentsJohannes Ranke1-0/+4
2018-09-22Add test and update docsJohannes Ranke1-3/+3
2018-09-21Support FOMC in PEC_soilJohannes Ranke1-10/+64
2018-07-10EFSA PEC soil guidance from 2017Johannes Ranke4-50/+192
- Implement the new guidance as well as possible - Maintenance work addressing CRAN checks
2018-07-04Some documentation updatesJohannes Ranke2-7/+8
Document that TOXSWA 5.5.3 is supported in the help files
2018-06-11Adapt to TOXSWA 5.5.3Johannes Ranke1-5/+13
2018-06-08Enable PEC porewater for the default scenarioJohannes Ranke1-1/+1
The default scenario uses soil parameters from the REACH guidance R.16, Table R.16-9.
2018-06-08Add actual/twa calcs for FOMC, typoJohannes Ranke2-2/+38
2018-03-01Rebuild static docs using current pkdownJohannes Ranke1-1/+4
Process PELMO runs in example using 15 (hyperthreading) cores and show processor info.

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