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2024-01-31Drift curve parameters from FOCUS SW Appendix BRanke Johannes2-2/+42
2024-01-31Merge remote-tracking branch 'refs/remotes/origin/main'Ranke Johannes21-133/+133
2024-01-31Reorganise data generationRanke Johannes10-135/+33
- Use inst/data_generation for R code generating data as in some of my other packages - data/*.RData files were checked using https://github.com/jranke/dotfiles/blob/main/bin/rda_diff contents were not changed - Remove ChangeLog, the history is in the git logs - Update docs and some links contained therein - use \doi{} markup - Move logs to log directory
2023-11-12Enable markdown and rebuild docsJohannes Ranke21-132/+132
2022-11-11Remove Remotes: field from DESCRIPTIONJohannes Ranke1-1/+1
It causes trouble with remotes::install_deps() on travis, see the various previous build logs.
2022-11-10set_nd_nq is now in mkin, fix Steps12 bugJohannes Ranke4-123/+37
If a scenario with a slash "/" was selected in PEC_sw_focus(), the Step 2 file generated giving an error (path not found) in the Steps12 calculator, because the scenario name is part of the "compound" name in this implementation, in order to show it in the list that the calculator presents.
2021-11-19Update docs and logsJohannes Ranke1-1/+1
2020-07-23PEC_sw_drift: Rautmann formula (1 app, Ackerbau)Johannes Ranke2-3/+13
This makes it possible to calculate drift PECsw for other distances than present in the JKI data or the Rautmann paper.
2020-07-23Update docs, use R6 support of roxygenJohannes Ranke1-22/+54
2020-07-07Remove copyright headers, update TOXSWA_cwa testJohannes Ranke2-2/+2
- The window column of the windows component of a TOXSWA_cwa object is not a factor any more, but a character vector. - testthat::expect_equal_to_reference is replaced by testthat::expect_known_output, so we can have git diff show what has changed
2020-06-17TSCF estimation equations, update docsJohannes Ranke11-16/+78
Briggs et al. (1982) and Dettenmaier et al. (2009)
2020-04-16Make na.rm = FALSE the default for geomean()Johannes Ranke22-100/+296
This makes more sense and is in line with mean() from base R. Adapt tests and update docs.
2019-10-23Fix static docs for set_nd_nqJohannes Ranke1-7/+1
2019-10-15Residue processing for depth profiles over timeJohannes Ranke2-64/+103
2019-10-10Do not mess with zero values at time zeroJohannes Ranke1-1/+1
2019-10-10Fix set_nd for metabolites, handle zero at time zeroJohannes Ranke1-2/+2
2019-10-10Fix documentation for set_ndJohannes Ranke1-12/+7
2019-10-10Finish documentation of set_nd and test itJohannes Ranke1-2/+6
2019-10-09Function to set non-detects in residue seriesJohannes Ranke1-0/+65
2019-09-27Fix for UK drainage, some EFSA interception and washoffJohannes Ranke4-1/+118
- PEC_sw_drainage_UK() gave results that were a little bit too high for the substances with the highest Koc (>4000), as I used 0.01% instead of 0.008% for them. This must have come from an old vesion of the UK data requirements handbook, at least I do not have another explanation - Add EFSA interception (from 2014 DegT50 guidance) and tier 1 crop wash-off factors (from 2017 PEC soil guidance) for some major arable crops - Update docs
2019-09-18Add url: tag to _pkgdown.yml, typo, update docsJohannes Ranke1-1/+1
2019-06-12Update of static docsJohannes Ranke1-3/+2
2019-05-14Add Exposit version 3.01a2 for runoff calculationsJohannes Ranke2-4/+8
At the request of Muris Korkaric (Agroscope). This is for 3 m buffer only and provides consistency with earlier calculations
2019-04-29Additional runoff data used by AgroscopeJohannes Ranke2-2/+6
2019-04-26Formatting improvement for the online docsJohannes Ranke1-0/+1
2019-04-26Another take on completing the drift dataJohannes Ranke1-4/+47
The R script I used yesterday got lost because I used the .Rd file that got overwritten by roxygen later.
2019-02-19Stop endless appending to pesticide.txt exampleJohannes Ranke1-1/+1
2019-02-19Add German drainage calculations using Exposit 3.02Johannes Ranke4-11/+75
2019-01-31Separate out PELMO utilities into rPELMOJohannes Ranke24-285/+45
2019-01-30Convenience function for metabolite PEC soilJohannes Ranke1-0/+24
2018-09-22Add test and update docsJohannes Ranke3-3/+36
2018-09-21Support FOMC in PEC_soilJohannes Ranke1-5/+11
2018-07-10EFSA PEC soil guidance from 2017Johannes Ranke4-11/+82
- Implement the new guidance as well as possible - Maintenance work addressing CRAN checks
2018-07-04Some documentation updatesJohannes Ranke3-6/+7
Document that TOXSWA 5.5.3 is supported in the help files
2018-06-08Add actual/twa calcs for FOMC, typoJohannes Ranke2-1/+31
2018-03-01Rebuild static docs using current pkdownJohannes Ranke1-1/+4
Process PELMO runs in example using 15 (hyperthreading) cores and show processor info.
2018-01-29Documentation fixes and updatesJohannes Ranke4-11/+4
2018-01-29Correction of return value documentation for PEC_sw_exposit_runoffJohannes Ranke1-1/+1
Rebuild pkgdown documentation
2017-11-04Option to thin low TOXSWA PECsw data for plottingJohannes Ranke3-10/+25
to reduce the file size of plots e.g. as PDF files
2017-11-03Also return runoff percentagesJohannes Ranke1-0/+1
2017-10-27Exposit runoff calculations for surface waterJohannes Ranke3-0/+105
2017-10-23Typos, rebuild static docsJohannes Ranke1-1/+1
2017-10-09Write Step 2 input files on windowsJohannes Ranke1-1/+1
2017-07-21New Option for Step 1, fix example, update docsJohannes Ranke1-3/+8
Also add the reference file for testing Step12 input file generation
2017-06-22Add scenario, region and season to run nameJohannes Ranke1-1/+2
2017-06-19Single line of generated Step12 input file partially validatedJohannes Ranke2-12/+35
2017-06-17Start with the generation of an input fileJohannes Ranke1-1/+11
2017-05-24Fix for the sawtooth function for repeated applicationsJohannes Ranke1-2/+2
For n > 2, the second application was made at 2 * i instead of i.
2017-05-24Re-enable PELMO examples and testsJohannes Ranke1-3/+0
- Add .gitattributes to make sure CRLF line endings are kept for PELMO .psm files - Update static docs
2017-05-17Documentation fixJohannes Ranke1-2/+2

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