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2021-11-19Update docs and logsJohannes Ranke1-1/+1
2020-07-23PEC_sw_drift: Rautmann formula (1 app, Ackerbau)Johannes Ranke2-3/+13
This makes it possible to calculate drift PECsw for other distances than present in the JKI data or the Rautmann paper.
2020-07-23Update docs, use R6 support of roxygenJohannes Ranke1-22/+54
2020-07-07Remove copyright headers, update TOXSWA_cwa testJohannes Ranke2-2/+2
- The window column of the windows component of a TOXSWA_cwa object is not a factor any more, but a character vector. - testthat::expect_equal_to_reference is replaced by testthat::expect_known_output, so we can have git diff show what has changed
2020-06-17TSCF estimation equations, update docsJohannes Ranke11-16/+78
Briggs et al. (1982) and Dettenmaier et al. (2009)
2020-04-16Make na.rm = FALSE the default for geomean()Johannes Ranke22-100/+296
This makes more sense and is in line with mean() from base R. Adapt tests and update docs.
2019-10-23Fix static docs for set_nd_nqJohannes Ranke1-7/+1
2019-10-15Residue processing for depth profiles over timeJohannes Ranke2-64/+103
2019-10-10Do not mess with zero values at time zeroJohannes Ranke1-1/+1
2019-10-10Fix set_nd for metabolites, handle zero at time zeroJohannes Ranke1-2/+2
2019-10-10Fix documentation for set_ndJohannes Ranke1-12/+7
2019-10-10Finish documentation of set_nd and test itJohannes Ranke1-2/+6
2019-10-09Function to set non-detects in residue seriesJohannes Ranke1-0/+65
2019-09-27Fix for UK drainage, some EFSA interception and washoffJohannes Ranke4-1/+118
- PEC_sw_drainage_UK() gave results that were a little bit too high for the substances with the highest Koc (>4000), as I used 0.01% instead of 0.008% for them. This must have come from an old vesion of the UK data requirements handbook, at least I do not have another explanation - Add EFSA interception (from 2014 DegT50 guidance) and tier 1 crop wash-off factors (from 2017 PEC soil guidance) for some major arable crops - Update docs
2019-09-18Add url: tag to _pkgdown.yml, typo, update docsJohannes Ranke1-1/+1
2019-06-12Update of static docsJohannes Ranke1-3/+2
2019-05-14Add Exposit version 3.01a2 for runoff calculationsJohannes Ranke2-4/+8
At the request of Muris Korkaric (Agroscope). This is for 3 m buffer only and provides consistency with earlier calculations
2019-04-29Additional runoff data used by AgroscopeJohannes Ranke2-2/+6
2019-04-26Formatting improvement for the online docsJohannes Ranke1-0/+1
2019-04-26Another take on completing the drift dataJohannes Ranke1-4/+47
The R script I used yesterday got lost because I used the .Rd file that got overwritten by roxygen later.
2019-02-19Stop endless appending to pesticide.txt exampleJohannes Ranke1-1/+1
2019-02-19Add German drainage calculations using Exposit 3.02Johannes Ranke4-11/+75
2019-01-31Separate out PELMO utilities into rPELMOJohannes Ranke24-285/+45
2019-01-30Convenience function for metabolite PEC soilJohannes Ranke1-0/+24
2018-09-22Add test and update docsJohannes Ranke3-3/+36
2018-09-21Support FOMC in PEC_soilJohannes Ranke1-5/+11
2018-07-10EFSA PEC soil guidance from 2017Johannes Ranke4-11/+82
- Implement the new guidance as well as possible - Maintenance work addressing CRAN checks
2018-07-04Some documentation updatesJohannes Ranke3-6/+7
Document that TOXSWA 5.5.3 is supported in the help files
2018-06-08Add actual/twa calcs for FOMC, typoJohannes Ranke2-1/+31
2018-03-01Rebuild static docs using current pkdownJohannes Ranke1-1/+4
Process PELMO runs in example using 15 (hyperthreading) cores and show processor info.
2018-01-29Documentation fixes and updatesJohannes Ranke4-11/+4
2018-01-29Correction of return value documentation for PEC_sw_exposit_runoffJohannes Ranke1-1/+1
Rebuild pkgdown documentation
2017-11-04Option to thin low TOXSWA PECsw data for plottingJohannes Ranke3-10/+25
to reduce the file size of plots e.g. as PDF files
2017-11-03Also return runoff percentagesJohannes Ranke1-0/+1
2017-10-27Exposit runoff calculations for surface waterJohannes Ranke3-0/+105
2017-10-23Typos, rebuild static docsJohannes Ranke1-1/+1
2017-10-09Write Step 2 input files on windowsJohannes Ranke1-1/+1
2017-07-21New Option for Step 1, fix example, update docsJohannes Ranke1-3/+8
Also add the reference file for testing Step12 input file generation
2017-06-22Add scenario, region and season to run nameJohannes Ranke1-1/+2
2017-06-19Single line of generated Step12 input file partially validatedJohannes Ranke2-12/+35
2017-06-17Start with the generation of an input fileJohannes Ranke1-1/+11
2017-05-24Fix for the sawtooth function for repeated applicationsJohannes Ranke1-2/+2
For n > 2, the second application was made at 2 * i instead of i.
2017-05-24Re-enable PELMO examples and testsJohannes Ranke1-3/+0
- Add .gitattributes to make sure CRLF line endings are kept for PELMO .psm files - Update static docs
2017-05-17Documentation fixJohannes Ranke1-2/+2
2017-05-16Add TWA concentrations for days > 1, fix linkJohannes Ranke2-6/+11
Now we have seven test calculations for the Step 1 calculator, all perfectly passing. This provides confidence that this is a correct reimplementation of the Step 1 part of the Step 1/2 calculator.
2017-05-16Finish the Step 1 calculator including testsJohannes Ranke8-16/+111
Some cleaning up. PELMO facilities do not currently work at my end, as I have no working wine installation on this computer
2017-05-15Start of an Steps 1/2 calculator in RJohannes Ranke2-0/+58
2017-01-31Small documentation fixJohannes Ranke1-1/+1
2017-01-30Correct psm file in the example with metabolitesJohannes Ranke1-1/+26
2017-01-30Test reproducing the FOCUS Summary informationJohannes Ranke2-1/+10
generated from the FOCUS PELMO GUI, as copied into the text files in the testdata directory.

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