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2016-07-30Read cwas from .out files with metabolitesJohannes Ranke1-5/+27
TOXSWA 4 stores the detailed output for SWASH runs with metabolites in its .out files. With this commit it is possible to read in .out files from such runs with metabolites. Default is to read in the concentrations for the parent, a newly gained "substance" argument makes it possible to specify the metabolite for which the data should be read.
2016-07-15Fix calculation of t_firstjanJohannes Ranke1-0/+6
There is an inconsistency in (some?) output files, so the first datetime needs to be fixed before reading it into a data frame
2016-06-08Use the concentration at the end of the hourJohannes Ranke1-3/+5
This is also what TOXSWA presents in the summary files
2016-03-10Merge the NL drift calculations based on percentages into PEC_sw_driftJohannes Ranke2-51/+12
2016-03-10Add NL specific drift calculationsJohannes Ranke1-0/+49
2016-02-04Test reading .out files and close connectionsJohannes Ranke1-3/+2
2016-02-04Improve reading spead for new TOXSWA formatJohannes Ranke1-11/+15
2016-02-04Read cwa data from TOXSWA 4.4.2 .out filesJohannes Ranke1-38/+91
2015-12-27Fix rounding of endpoint retrieval functionsJohannes Ranke1-1/+5
2015-12-22EFSA 2015 tier 1 PEC soil, clean up, add static docsJohannes Ranke11-168/+250
2015-12-18Documentation fixes, chents is currently a hard dependencyJohannes Ranke2-11/+21
2015-10-15Add endpoint and GUS functions, roxygenizeJohannes Ranke2-0/+176
2015-10-01Add some soil data for FOCUS groundwater scenariosJohannes Ranke1-0/+9
2015-09-11Added PEC soil for products as defined in chents v0.1-2Johannes Ranke1-1/+14
2015-09-10Add PEC soil for product with serveral aisJohannes Ranke2-271/+6
2015-08-22Small documentation updatesJohannes Ranke1-2/+3
2015-08-21Merge branch 'master' into pfm_chentJohannes Ranke2-4/+6
2015-08-21Updates to pass checks and testsJohannes Ranke1-0/+2
2015-07-02Changes to pass R CMD check --as-cran, roxygen runJohannes Ranke1-4/+4
2015-06-18Merge branch 'master' into pfm_chentJohannes Ranke8-0/+394
Conflicts: pkg/DESCRIPTION pkg/NAMESPACE
2015-06-12Add sediment PEC calculations using the percentage methodJohannes Ranke1-0/+50
2015-06-12Make UK drainage with non-SFO soil degradation workJohannes Ranke1-6/+8
2015-06-11Now we pass R CMD checkJohannes Ranke2-12/+23
2015-06-11Add UK tier 1 drainage PEC calculationsJohannes Ranke2-0/+95
2015-06-11Add facilities to calculate decline curvesJohannes Ranke2-0/+84
2015-06-11Rename PEC_sw_drift() to PEC_sw_drift_ini()Johannes Ranke1-0/+55
2015-06-11Add simple drift PEC ini calculationsJohannes Ranke1-0/+55
These are tested for field crops with the CRD spreadsheet
2015-06-11JKI drift percentage data for field crops and pome/stone fruitJohannes Ranke1-0/+42
2015-06-11Intermediate stage for pfm_chentJohannes Ranke2-3/+10
2015-06-11FormattingJohannes Ranke1-1/+1
2015-05-24Start of a pfm_chent data objectJohannes Ranke2-0/+335
2015-05-07Bugfix: Reset maximum event concentration for each eventJohannes Ranke1-0/+1
2015-05-07Make quarterly labels for plot.TOXSWA_cwaJohannes Ranke1-2/+9
2015-04-24Add a geometric mean functionJohannes Ranke1-0/+38
2015-04-22Add simplest PEC soil calcs, use testthatJohannes Ranke1-0/+45
2015-01-23Add option to plot relative to maximumJohannes Ranke1-2/+3
2015-01-13README.rmd with example, fix reading unzipped filesJohannes Ranke1-3/+8
2015-01-13Correctly initialize R6 fields, read from zip filesJohannes Ranke1-18/+29
2015-01-07Pass ... parameters to added cwa linesJohannes Ranke1-1/+1
2014-12-19Initial commit: R6 class for TOXSWA cwa filesJohannes Ranke1-0/+267

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