1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
|
# pfm
```{r, echo = FALSE}
options(device = function(file, width = 7, height = 7, ...) {
cairo_pdf(tempfile(), width = width, height = height, ...)
})
```
The R package **pfm** provides some utilities for dealing with FOCUS pesticide fate modelling tools,
(currently only TOXSWA cwa files), made available under the GNU public license.
This means:
This program is free software: you can redistribute it and/or modify it under
the terms of the GNU General Public License as published by the Free Software
Foundation, either version 3 of the License, or (at your option) any later
version.
This program is distributed in the hope that it will be useful, but WITHOUT
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
details.
You should have received a copy of the GNU General Public License along with
this program. If not, see <http://www.gnu.org/licenses/>
## Installation
You can install the package from [github](http://github.com/jranke/pfm), e.g.
using the `devtools` package. Using `quick = TRUE` skips docs,
multiple-architecture builds, demos, and vignettes, to make installation as
fast and painless as possible.
```{r, eval = FALSE}
library(devtools)
install_github("jranke/pfm", subdir = "pkg", quick = TRUE)
```
## Use
### Analyse TOXSWA output
Read in and analyse a cwa file:
```{r}
library(pfm)
example_cwa <- read.TOXSWA_cwa("00003s_pa.cwa")
plot(example_cwa)
example_cwa$get_events(c(20, 100))
example_cwa$moving_windows(c(7, 21))
print(example_cwa)
```
### Calculate PEC soil
Simple PEC soil calculation for an application rate of 100 g/ha and
25% interception, assuming complete mixing into 5 cm and a soil bulk
density of 1.5 kg/L, output in mg/kg:
```{r}
PEC_soil(100, int = 0.25)
```
### Rautmann drift data
Some of the drift percentage data published by the JKI are included. To
see the data for one application:
```{r}
drift_data_JKI[1]
```
### PEC surface water due to drift
Initial PEC values for an application of 100 g/ha in the vicinity of a 30 cm
deep water body are obtained using
```{r}
PEC_sw_drift(100, applications = 1)
```
|
