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<title>Utilities for Pesticide Fate Modelling • pfm</title>
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<meta property="og:description" content="Utilities for simple calculations of predicted environmental
concentrations ('PEC' values) and for dealing with data from some FOCUS
pesticide fate modelling software packages.">
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<div id="pfm" class="section level1">
<div class="page-header"><h1 class="hasAnchor">
<a href="#pfm" class="anchor"></a>pfm</h1></div>
<p>The R package <strong>pfm</strong> provides some utilities for fate modelling, including dealing with FOCUS pesticide fate modelling tools, (currently only TOXSWA cwa and out files), made available under the GNU public license. This means:</p>
<div class="sourceCode"><pre class="sourceCode R"><code class="sourceCode r">This program is free software<span class="op">:</span><span class="st"> </span>you can redistribute it and<span class="op">/</span>or modify it under
the terms of the GNU General Public License as published by the Free Software
Foundation, either version <span class="dv">3</span> of the License, <span class="kw">or</span> (at your option) any later
version.
This program is distributed <span class="cf">in</span> the hope that it will be useful, but WITHOUT
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
FOR A PARTICULAR PURPOSE. See the GNU General Public License <span class="cf">for</span> more
details.
You should have received a copy of the GNU General Public License along with
this program. If not, see <span class="op"><</span>http<span class="op">:</span><span class="er">//</span>www.gnu.org<span class="op">/</span>licenses<span class="op">/</span><span class="er">></span></code></pre></div>
<div id="installation" class="section level2">
<h2 class="hasAnchor">
<a href="#installation" class="anchor"></a>Installation</h2>
<p>The easiest way to install the package is probably to use <a href="https://cran.r-project.org/package=drat">drat</a>:</p>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">install.packages</span>(<span class="st">"drat"</span>)
drat<span class="op">::</span><span class="kw"><a href="http://www.rdocumentation.org/packages/drat/topics/addRepo">addRepo</a></span>(<span class="st">"jranke"</span>)
<span class="kw">install.packages</span>(<span class="st">"pfm"</span>)</code></pre></div>
<p>Alternatively you can install the package using the <code>devtools</code> package. Using <code>quick = TRUE</code> skips docs, multiple-architecture builds, demos, and vignettes.</p>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">library</span>(devtools)
<span class="kw"><a href="http://www.rdocumentation.org/packages/devtools/topics/install_github">install_github</a></span>(<span class="st">"jranke/pfm"</span>, <span class="dt">quick =</span> <span class="ot">TRUE</span>)</code></pre></div>
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<div id="use" class="section level2">
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<a href="#use" class="anchor"></a>Use</h2>
<p>Please refer to the <a href="http://pkgdown.jrwb.de/pfm/reference/index.html">reference</a>.</p>
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<div id="examples" class="section level2">
<h2 class="hasAnchor">
<a href="#examples" class="anchor"></a>Examples</h2>
<p>One recent nice example of the usage of this package is the visualisation of a time weighted average for a sawtooth curve obtained from several overlays of mkinfit predictions as shown <a href="http://pkgdown.jrwb.de/pfm/reference/plot.one_box.html">here</a>.</p>
<p>Another, even more recent example shows how FOCUS PELMO can be run in parallel under Linux as shown <a href="http://pkgdown.jrwb.de/pfm/reference/PELMO_runs.html">here</a>.</p>
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<li>Browse source code at <br><a href="https://github.com/jranke/pfm">https://github.com/jranke/pfm</a>
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<li>Report a bug at <br><a href="NA">NA</a>
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<li>GPL</li>
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<li>Johannes Ranke <br><small class="roles"> Author, maintainer, copyright holder </small> <a href="https://orcid.org/0000-0003-4371-6538" target="orcid.widget"><img src="https://members.orcid.org/sites/default/files/vector_iD_icon.svg" class="orcid" height="16"></a> </li>
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