blob: 089bd814be311773a9332255c71d6afa054f70c1 (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
|
# Package index
## General utility functions
Functions that are independent of specific fate modelling areas
- [`geomean()`](https://pkgdown.jrwb.de/pfm/reference/geomean.md) :
Calculate the geometric mean
- [`one_box()`](https://pkgdown.jrwb.de/pfm/reference/one_box.md) :
Create a time series of decline data
- [`plot(`*`<one_box>`*`)`](https://pkgdown.jrwb.de/pfm/reference/plot.one_box.md)
: Plot time series of decline data
- [`sawtooth()`](https://pkgdown.jrwb.de/pfm/reference/sawtooth.md) :
Create decline time series for multiple applications
- [`twa()`](https://pkgdown.jrwb.de/pfm/reference/twa.md) : Calculate a
time weighted average concentration
- [`max_twa()`](https://pkgdown.jrwb.de/pfm/reference/max_twa.md) : The
maximum time weighted average concentration for a moving window
- [`pfm_degradation()`](https://pkgdown.jrwb.de/pfm/reference/pfm_degradation.md)
: Calculate a time course of relative concentrations based on an
mkinmod model
- [`SFO_actual_twa()`](https://pkgdown.jrwb.de/pfm/reference/SFO_actual_twa.md)
: Actual and maximum moving window time average concentrations for SFO
kinetics
- [`FOMC_actual_twa()`](https://pkgdown.jrwb.de/pfm/reference/FOMC_actual_twa.md)
: Actual and maximum moving window time average concentrations for
FOMC kinetics
- [`reexports`](https://pkgdown.jrwb.de/pfm/reference/reexports.md)
[`set_nd_nq`](https://pkgdown.jrwb.de/pfm/reference/reexports.md)
[`set_nd_nq_focus`](https://pkgdown.jrwb.de/pfm/reference/reexports.md)
: Objects exported from other packages
- [`TSCF()`](https://pkgdown.jrwb.de/pfm/reference/TSCF.md) : Estimation
of the transpiration stream concentration factor
## Predicted environmental concentrations in soil
- [`PEC_soil()`](https://pkgdown.jrwb.de/pfm/reference/PEC_soil.md) :
Calculate predicted environmental concentrations in soil
- [`PEC_soil_mets()`](https://pkgdown.jrwb.de/pfm/reference/PEC_soil_mets.md)
: Calculate initial and accumulation PEC soil for a set of metabolites
- [`soil_scenario_data_EFSA_2015`](https://pkgdown.jrwb.de/pfm/reference/soil_scenario_data_EFSA_2015.md)
: Properties of the predefined scenarios from the EFSA guidance from
2015
- [`soil_scenario_data_EFSA_2017`](https://pkgdown.jrwb.de/pfm/reference/soil_scenario_data_EFSA_2017.md)
: Properties of the predefined scenarios from the EFSA guidance from
2017
- [`PEC_FOMC_accu_rel()`](https://pkgdown.jrwb.de/pfm/reference/PEC_FOMC_accu_rel.md)
: Get the relative accumulation of an FOMC model over multiples of an
interval
- [`EFSA_washoff_2017`](https://pkgdown.jrwb.de/pfm/reference/EFSA_washoff_2017.md)
: Subset of EFSA crop washoff default values
## Predicted environmental concentrations in groundwater
- [`FOCUS_GW_scenarios_2012`](https://pkgdown.jrwb.de/pfm/reference/FOCUS_GW_scenarios_2012.md)
: A very small subset of the FOCUS Groundwater scenario definitions
- [`EFSA_GW_interception_2014`](https://pkgdown.jrwb.de/pfm/reference/EFSA_GW_interception_2014.md)
: Subset of EFSA crop interception default values for groundwater
modelling
## Predicted environmental concentrations in surface water
- [`PEC_sw_drift()`](https://pkgdown.jrwb.de/pfm/reference/PEC_sw_drift.md)
: Calculate predicted environmental concentrations in surface water
due to drift
- [`drift_data_JKI`](https://pkgdown.jrwb.de/pfm/reference/drift_data_JKI.md)
: Deposition from spray drift expressed as percent of the applied dose
as published by the JKI
- [`drift_parameters_focus`](https://pkgdown.jrwb.de/pfm/reference/drift_parameters_focus.md)
: Regression parameters for the Rautmann drift data
- [`drift_percentages_rautmann()`](https://pkgdown.jrwb.de/pfm/reference/drift_percentages_rautmann.md)
: Calculate drift percentages based on Rautmann data
- [`PEC_sw_drainage_UK()`](https://pkgdown.jrwb.de/pfm/reference/PEC_sw_drainage_UK.md)
[`drainage_date_UK()`](https://pkgdown.jrwb.de/pfm/reference/PEC_sw_drainage_UK.md)
: Calculate initial predicted environmental concentrations in surface
water due to drainage using the UK method
- [`PEC_sw_sed()`](https://pkgdown.jrwb.de/pfm/reference/PEC_sw_sed.md)
: Calculate predicted environmental concentrations in sediment from
surface water concentrations
- [`PEC_sw_focus()`](https://pkgdown.jrwb.de/pfm/reference/PEC_sw_focus.md)
: Calculate PEC surface water at FOCUS Step 1
- [`chent_focus_sw()`](https://pkgdown.jrwb.de/pfm/reference/chent_focus_sw.md)
: Create a chemical compound object for FOCUS Step 1 calculations
- [`FOCUS_Step_12_scenarios`](https://pkgdown.jrwb.de/pfm/reference/FOCUS_Step_12_scenarios.md)
: Step 1/2 scenario data as distributed with the FOCUS Step 1/2
calculator
- [`PEC_sw_exposit_drainage()`](https://pkgdown.jrwb.de/pfm/reference/PEC_sw_exposit_drainage.md)
: Calculate PEC surface water due to drainage as in Exposit 3
- [`PEC_sw_exposit_runoff()`](https://pkgdown.jrwb.de/pfm/reference/PEC_sw_exposit_runoff.md)
: Calculate PEC surface water due to runoff and erosion as in Exposit
3
- [`perc_runoff_exposit`](https://pkgdown.jrwb.de/pfm/reference/perc_runoff_exposit.md)
: Runoff loss percentages as used in Exposit 3
- [`perc_runoff_reduction_exposit`](https://pkgdown.jrwb.de/pfm/reference/perc_runoff_reduction_exposit.md)
: Runoff reduction percentages as used in Exposit
- [`TOXSWA_cwa`](https://pkgdown.jrwb.de/pfm/reference/TOXSWA_cwa.md) :
R6 class for holding TOXSWA water concentration data and associated
statistics
- [`read.TOXSWA_cwa()`](https://pkgdown.jrwb.de/pfm/reference/read.TOXSWA_cwa.md)
: Read TOXSWA surface water concentrations
- [`plot(`*`<TOXSWA_cwa>`*`)`](https://pkgdown.jrwb.de/pfm/reference/plot.TOXSWA_cwa.md)
: Plot TOXSWA surface water concentrations
## Classifications and indicators
Evaluating environmental fate properties
- [`SSLRC_mobility_classification()`](https://pkgdown.jrwb.de/pfm/reference/SSLRC_mobility_classification.md)
: Determine the SSLRC mobility classification for a chemical substance
from its Koc
- [`GUS()`](https://pkgdown.jrwb.de/pfm/reference/GUS.md)
[`print(`*`<GUS_result>`*`)`](https://pkgdown.jrwb.de/pfm/reference/GUS.md)
: Groundwater ubiquity score based on Gustafson (1989)
## Work with chent objects containing relevant information
- [`endpoint()`](https://pkgdown.jrwb.de/pfm/reference/endpoint.md)
[`soil_DT50()`](https://pkgdown.jrwb.de/pfm/reference/endpoint.md)
[`soil_Kfoc()`](https://pkgdown.jrwb.de/pfm/reference/endpoint.md)
[`soil_N()`](https://pkgdown.jrwb.de/pfm/reference/endpoint.md)
[`soil_sorption()`](https://pkgdown.jrwb.de/pfm/reference/endpoint.md)
: Retrieve endpoint information from the chyaml field of a chent
object
## Utilities
- [`get_vertex()`](https://pkgdown.jrwb.de/pfm/reference/get_vertex.md)
: Fit a parabola through three points
|
