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library(pfm)
context("Read and analyse TOXSWA cwa files")
test_that("TOXSWA cwa file is correctly read", {
H_sw_D4_pond <- read.TOXSWA_cwa("00001p_pa.cwa",
basedir = "SwashProjects/project_H_sw/TOXSWA",
zipfile = system.file("testdata/SwashProjects.zip",
package = "pfm"))
H_sw_D4_pond$zipfile <- NULL # do not test the path
expect_equal_to_reference(H_sw_D4_pond, file = "H_sw_D4_pond.rds")
})
test_that("Getting events and moving window analysis works", {
H_sw_R1_stream <- read.TOXSWA_cwa("00003s_pa.cwa",
basedir = "SwashProjects/project_H_sw/TOXSWA",
zipfile = system.file("testdata/SwashProjects.zip",
package = "pfm"))
# Event analysis with two different thresholds
H_sw_R1_stream$get_events(c(2, 10))
expect_equal_to_reference(H_sw_R1_stream$events, file = "H_sw_R1_stream_events.rds")
# Moving window analysis
H_sw_R1_stream$moving_windows(c(7, 21))
expect_equal_to_reference(H_sw_R1_stream$windows, file = "H_sw_R1_stream_windows.rds")
})
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