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authorJohannes Ranke <jranke@uni-bremen.de>2020-04-25 00:05:41 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2020-04-25 00:05:41 +0200
commit7e750f644cbbc9ad35cbdc4f4909b52faede853d (patch)
tree8cc7a5f584e574432de5730e652ffe535e698ab6
parenta6ec2095b8940f9f9ce22f0641e743ce752c5725 (diff)
Changes for backports of R 4.0.0 to bullseye and buster
-rw-r--r--README31
-rwxr-xr-xbackport18
-rwxr-xr-xbackport_others8
-rwxr-xr-xbuild2
-rwxr-xr-xbuild_others2
-rwxr-xr-xclean4
-rwxr-xr-xmove_debs6
7 files changed, 49 insertions, 22 deletions
diff --git a/README b/README
index dcd0450..58e26af 100644
--- a/README
+++ b/README
@@ -1,5 +1,5 @@
This directory contains my scripts to build backports of R software from Debian
-sid to older Debian distributions.
+sid or even experimental to older Debian distributions.
Currently I am using the following setup:
@@ -27,9 +27,13 @@ creation under /var/cache/pbuilder, among others:
With the pbuilderrc mentioned above, this can be created as a normal user with
export ARCH=i386
- export DIST=buster
+ export DIST=bullseye
sudo -E pbuilder create
+We also need to create the build directory:
+
+ sudo mkdir /var/cache/pbuilder/bullseye-i386/build
+
When using these scripts on Debian, I used to configure sudo to allow my normal
user to use pbuilder, apt-get and the backporting scripts. Currently, I have
set up my Debian installations using the Ubuntu like sudo configuration that
@@ -37,3 +41,26 @@ I select during the installation.
I am building other architectures on different machines (raspi: armxx) or in a
local chroot (amd64).
+
+For creating a local chroot, I am using (e.g. for bullseye)
+
+ cd /var/chroot
+ sudo mkdir bullseye-amd64
+ sudo debootstrap bullseye bullseye-amd64 http://ftp.de.debian.org/debian/
+
+Then I add a new entry in /etc/schroot/schroot.conf like
+
+ [bullseye64]
+ description=Debian bullseye 64-bit
+ type=directory
+ profile=default
+ directory=/var/chroot/bullseye-amd64
+
+and use sudo schroot -c bullseye64 to enter it. Within the chroot I install vim
+and add the matching local r-cran repository to /etc/apt/sources.list like
+
+ deb http://localhost/r-cran bullseye-cran40/
+ deb-src http://localhost/r-cran bullseye-cran40/
+
+In the chroot, build-essential and devscripts have to be installed
+
diff --git a/backport b/backport
index d479968..acfde10 100755
--- a/backport
+++ b/backport
@@ -6,8 +6,8 @@ ARCH=i386
export ARCH
# R version against which the software is compiled
-iteration=0
-Rversion=3.6.1
+iteration=1
+Rversion=4.0.0
# Set required r-base-dev version for packages build-depending on R
rbasedev="r-base-dev (>= $Rversion)"
@@ -26,7 +26,7 @@ rcrandir=/home/jranke/git/uni/website/www/ranke/r-cran
usage()
{
-echo "Usage: ./backport [options] sourcepackage stretch|buster"
+echo "Usage: ./backport [options] sourcepackage stretch|buster|bullseye"
echo "Options:"
echo " -k, --keep Keep copied source package and directory used for package building"
echo " -s, --skip Skip apt-get update/upgrade and pbuilder update"
@@ -62,7 +62,7 @@ pkg=$1
DIST=$2
# Validate distribution argument
-if [ $DIST != "stretch" ] && [ $DIST != "buster" ]; then usage; exit 1; fi
+if [ $DIST != "stretch" ] && [ $DIST != "buster" ] && [ $DIST != "bullseye" ]; then usage; exit 1; fi
export DIST
# Remove previously extracted sources
@@ -71,13 +71,13 @@ then
sudo rm -rf `ls -d $pkg-*`
fi
-# Get current source (from unstable or buildd-unstable, depending on sources.list)
+# Get current source from sid. If we want buildd-unstable, we need to change to -t buildd-unstable below
if [ "$skip" = false ]
then
sudo apt-get update
sudo apt-get upgrade
fi
-sudo apt-get source $pkg
+sudo apt-get source -t sid $pkg
# Copy sources to $DIST directory to enable parallel builds
mkdir -p $DIST
@@ -98,8 +98,8 @@ cranversion=$upstreamversion"~"$DIST"cran.$iteration"
# would make an update of the archive index inside the loop in backport_others
# necessary
-new_dsc=$rcrandir/$DIST-cran35/${pkg}_${cranversion}.dsc
-logfile=$rcrandir/$DIST-cran35/${pkg}_${cranversion}_${ARCH}.build
+new_dsc=$rcrandir/$DIST-cran40/${pkg}_${cranversion}.dsc
+logfile=$rcrandir/$DIST-cran40/${pkg}_${cranversion}_${ARCH}.build
if [ -e $new_dsc ]; then
@@ -136,7 +136,7 @@ else
--aptcache /var/cache/pbuilder/$DIST-$ARCH/aptcache
fi
sudo -E pdebuild --debbuildopts '-sa' \
- --buildresult $rcrandir/$DIST-cran35/ \
+ --buildresult $rcrandir/$DIST-cran40/ \
--logfile $logfile \
-- --override-config \
--distribution $DIST --basetgz /var/cache/pbuilder/$DIST-$ARCH-base.tgz \
diff --git a/backport_others b/backport_others
index dab6139..dacac7a 100755
--- a/backport_others
+++ b/backport_others
@@ -11,7 +11,7 @@ export ARCH
usage()
{
-echo "Usage: ./backport_others [options] stretch|buster"
+echo "Usage: ./backport_others [options] stretch|buster|bullseye"
echo "Options:"
echo " -s Skip apt-get update/upgrade and pbuilder update"
}
@@ -51,7 +51,7 @@ then
fi
# Validate distribution argument
-if [ $DIST != "stretch" ] && [ $DIST != "buster" ]; then usage; exit 1; fi
+if [ $DIST != "stretch" ] && [ $DIST != "buster" ] && [ $DIST != "bullseye" ]; then usage; exit 1; fi
export DIST
# When doing a new repository, do lattice, r-cran-mass
@@ -63,8 +63,8 @@ export DIST
#for i in lattice r-cran-mass; do
#for i in rmatrix; do
#for i in survival nlme; do
-#for i in rpart mgcv boot cluster codetools foreign kernsmooth r-cran-class r-cran-coda r-cran-spatial r-cran-nnet rodbc littler rpy2 rkward; do
-for i in lattice nlme rmatrix mgcv boot cluster codetools foreign kernsmooth r-cran-class r-cran-coda r-cran-spatial r-cran-nnet r-cran-mass rodbc rpart survival littler rpy2 rkward; do
+#for i in rpart mgcv boot cluster codetools foreign kernsmooth r-cran-class r-cran-coda r-cran-spatial r-cran-nnet littler rpy2 rkward; do
+for i in lattice nlme rmatrix mgcv boot cluster codetools foreign kernsmooth r-cran-class r-cran-coda r-cran-spatial r-cran-nnet r-cran-mass rpart survival littler rpy2 rkward; do
./backport -s $i $DIST
diff --git a/build b/build
index 1e84502..439eabb 100755
--- a/build
+++ b/build
@@ -18,7 +18,7 @@ command -v lsb_release >/dev/null 2>&1 || {
DIST=`lsb_release -cs`
# URL of the local CRAN repo for checking for existing builds
-localcran="http://ryz/r-cran/$DIST-cran35/"
+localcran="http://ryz/r-cran/$DIST-cran40/"
skip=false
while test -n "${1}"; do
diff --git a/build_others b/build_others
index 658bd6a..fdb5dc0 100755
--- a/build_others
+++ b/build_others
@@ -39,6 +39,6 @@ fi
#for i in rmatrix nlme; do
#for i in survival; do
#for i in cluster foreign r-cran-class r-cran-spatial r-cran-nnet kernsmooth mgcv rodbc rpart littler rpy2 rkward; do
-for i in lattice rmatrix nlme cluster foreign r-cran-class r-cran-spatial r-cran-nnet r-cran-mass kernsmooth mgcv rodbc rpart survival littler rpy2 rkward; do
+for i in lattice rmatrix nlme cluster foreign r-cran-class r-cran-spatial r-cran-nnet r-cran-mass kernsmooth mgcv rpart survival littler rpy2 rkward; do
./build -s $i
done
diff --git a/clean b/clean
index b23428c..a2d5acb 100755
--- a/clean
+++ b/clean
@@ -4,14 +4,14 @@
usage()
{
-echo "Usage: ./clean [stretch|buster]"
+echo "Usage: ./clean [stretch|buster|bullseye]"
}
if [ $# -gt 1 ]; then usage; exit 1; fi
if [ $# -eq 1 ]
then
DIST=$1
- if [ $DIST != "stretch" ] && [ $DIST != "buster" ]; then usage; exit 1; fi
+ if [ $DIST != "stretch" ] && [ $DIST != "buster" ] && [ $DIST != "bullseye" ]; then usage; exit 1; fi
cd $DIST
fi
diff --git a/move_debs b/move_debs
index ad91384..50e763a 100755
--- a/move_debs
+++ b/move_debs
@@ -4,7 +4,7 @@
usage()
{
-echo "Usage: ./move_debs stretch|buster"
+echo "Usage: ./move_debs stretch|buster|bullseye"
}
# Positional argument
@@ -12,7 +12,7 @@ if [ $# -lt 1 ]; then usage; exit 1; fi
DIST=$1
# Validate distribution argument
-if [ $DIST != "stretch" ] && [ $DIST != "buster" ]; then usage; exit 1; fi
+if [ $DIST != "stretch" ] && [ $DIST != "buster" ] && [ $DIST != "bullseye" ]; then usage; exit 1; fi
sudo chown jranke $DIST/*${DIST}cran*_amd64.{deb,build}
-mv -v $DIST/*${DIST}cran*_amd64.{deb,build} /home/jranke/git/uni/website/www/ranke/r-cran/$DIST-cran35
+mv -v $DIST/*${DIST}cran*_amd64.{deb,build} /home/jranke/git/uni/website/www/ranke/r-cran/$DIST-cran40

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