diff options
| -rw-r--r-- | README | 10 | ||||
| -rw-r--r-- | backport_jags.sh | 2 | ||||
| -rw-r--r-- | backport_others.sh | 12 | ||||
| -rw-r--r-- | backport_r-base.sh | 32 | ||||
| -rw-r--r-- | build_jags.sh | 2 | ||||
| -rw-r--r-- | build_others.sh | 8 | ||||
| -rw-r--r-- | build_r-base.sh | 2 | ||||
| -rw-r--r-- | clean.sh | 2 | ||||
| -rw-r--r-- | move_squeeze64.sh | 3 |
9 files changed, 21 insertions, 52 deletions
@@ -1,7 +1,7 @@ This directory contains my scripts to build backports of R software from Debian sid to older Debian distributions. -Currently (2013-03-03) I am using the following setup: +Currently (2013-04-04) I am using the following setup: ~/.pbuilderrc contains: @@ -22,7 +22,7 @@ creation under /var/cache/pbuilder, among others: /var/cache/pbuilder/squeeze-i386-base.tgz -These have a standard Debian mirror and the security sources setup in their -/etc/apt/sources.list, as well as my local http package source where the r-base -package build results are available. I have also imported the apt key of my -repository inside the pbuilder chroots. +These have a standard Debian mirror, the security sources and the Debian +backports repository setup in their /etc/apt/sources.list, as well as my local +http package source where the r-base package build results are available. I +have also imported the apt key of my repository inside the pbuilder chroots. diff --git a/backport_jags.sh b/backport_jags.sh index f4ab3f1..71e30f9 100644 --- a/backport_jags.sh +++ b/backport_jags.sh @@ -39,7 +39,7 @@ dch -v "${cranversion}" --force-distribution -D $DIST-cran -b "Backport from Deb # Reverts for squeeze pbuilder update -pdebuild --debbuildopts '-sa' --buildresult /home/ranke/svn/website/www/ranke/r-cran/$DIST-cran/ -- --distribution $DIST --basetgz /var/cache/pbuilder/$DIST-$ARCH-base.tgz --aptcache /var/cache/pbuilder/$DIST-$ARCH/aptcache --buildplace /var/cache/pbuilder/$DIST-$ARCH/build +pdebuild --debbuildopts '-sa' --buildresult /home/ranke/svn/website/www/ranke/r-cran/$DIST-cran3/ -- --distribution $DIST --basetgz /var/cache/pbuilder/$DIST-$ARCH-base.tgz --aptcache /var/cache/pbuilder/$DIST-$ARCH/aptcache --buildplace /var/cache/pbuilder/$DIST-$ARCH/build if [ $? -ne 0 ]; then exit fi diff --git a/backport_others.sh b/backport_others.sh index b0e9b8e..9b66c63 100644 --- a/backport_others.sh +++ b/backport_others.sh @@ -12,7 +12,7 @@ # - Set the R version # R version against which the software is compiled -Rversion=2.15.3 +Rversion=3.0.0 echo Distribution is $DIST echo Architecture is $ARCH @@ -27,17 +27,17 @@ pbuilder update # lenny packages: #for i in boot cluster codetools foreign kernsmooth lattice mgcv nlme r-cran-class r-cran-spatial r-cran-nnet r-cran-mass rmatrix rodbc rpart survival littler; do # squeeze packages: -for i in boot cluster codetools foreign kernsmooth lattice mgcv nlme r-cran-class r-cran-spatial r-cran-nnet r-cran-mass rmatrix rodbc rpart survival littler rpy rkward r-cran-rjags; do +for i in boot cluster codetools foreign kernsmooth lattice mgcv nlme r-cran-class r-cran-spatial r-cran-nnet r-cran-mass rmatrix rodbc rpart survival littler rpy rkward; do apt-get source $i cd $i-* version=`dpkg-parsechangelog | grep ^Version | cut -f2 -d " "`~$DIST"cran".$Rversion - dch -b -v $version --force-distribution -D $DIST-cran $text + dch -b -v $version --force-distribution -D $DIST-cran3 $text - ssed -i -R '/^Build-Depends/s/r-base-dev \(>= 2\..*?\)/r-base-dev (>= 2.15.3-1~squeezecran.0)/' debian/control - ssed -i -R '/^Build-Depends-Indep/s/r-base-dev \(>= 2\..*?\)/r-base-dev (>= 2.15.3-1~squeezecran.0)/' debian/control + ssed -i -R '/^Build-Depends/s/r-base-dev \(>= \..*?\)/r-base-dev (>= 3.0.0-1~squeezecran.0)/' debian/control + ssed -i -R '/^Build-Depends-Indep/s/r-base-dev \(>= \..*?\)/r-base-dev (>= 3.0.0-1~squeezecran.0)/' debian/control dch -a "debian/control: adapt build dependencies on r-base-dev to current backport" - pdebuild --debbuildopts '-sa' --buildresult /home/ranke/svn/website/www/ranke/r-cran/$DIST-cran/ -- --distribution $DIST --basetgz /var/cache/pbuilder/$DIST-$ARCH-base.tgz --aptcache /var/cache/pbuilder/$DIST-$ARCH/aptcache --buildplace /var/cache/pbuilder/$DIST-$ARCH/build + pdebuild --debbuildopts '-sa' --buildresult /home/ranke/svn/website/www/ranke/r-cran/$DIST-cran3/ -- --distribution $DIST --basetgz /var/cache/pbuilder/$DIST-$ARCH-base.tgz --aptcache /var/cache/pbuilder/$DIST-$ARCH/aptcache --buildplace /var/cache/pbuilder/$DIST-$ARCH/build cd .. done diff --git a/backport_r-base.sh b/backport_r-base.sh index 74ed659..d2a08f1 100644 --- a/backport_r-base.sh +++ b/backport_r-base.sh @@ -45,7 +45,7 @@ echo CRAN version is $cranversion # Add new version to changelog dch -v "${cranversion}" --force-distribution -D $DIST-cran -b "Backport from Debian unstable to Debian $DIST" -# Reverts for squeeze and lenny: +# Reverts for squeeze: # 1. Starting with Debian packages for R 2.15.3 there is a build # dependency on 'libtiff5-dev' which is not in squeeze. Changing to # libtiff-dev, which is libtiff4-dev on squeeze. @@ -53,36 +53,8 @@ dch -v "${cranversion}" --force-distribution -D $DIST-cran -b "Backport from Deb sed -i '/^Build-Depends/s/libtiff5-dev/libtiff-dev/' debian/control dch -a "debian/control: Change Build-Depends: from libtiff5-dev to libtiff-dev" -# Reverts for lenny only: -if [ $DIST = "lenny" ] -then - - # 1. Starting with Debian packages for R 2.9.2 there is a build dependency - # on debhelper >= 7.2.3, which is not in lenny nor etch This also means we - # have to reinclude debian/r-doc-{info,html}.{postinst,prerm}, thanks Dirk - # for pointing this out. - - sed -i '/^Build-Depends/s/debhelper (>= 7.2.3)/debhelper/' debian/control - dch -a "debian/control: revert Build-Depends: to 'debhelper' since $DIST has a version < 7.2.3" - sed -i 's/dh_prep/dh_clean/g' debian/rules - dch -a "debian/rules: revert dh_prep calls to dh_clean calls since the latter is not present lennys version of 'debhelper'" - - # 2. Starting with Debian packages for R 2.9.2-2 there is an install - # dependency on 'dpkg (>= 1.15.4) | install-info'. Neither package is in - # Debian releases etch nor lenny. This also requires to reinclude - # debian/r-doc-{info,html}.{postinst,prerm}, just like for the fix above. - - sed -i '/^Depends/s/dpkg (>= 1.15.4) | install-info/dpkg | install-info/' debian/control - dch -a "debian/control: revert Depends: to 'dpkg | install-info' for r-doc-info since lenny has a version of dpkg < 1.15.4 and no separate package install-info" - - # 3. liblzma is not available in Debian distributions before squeeze - - sed -i '/^Build-Depends/s/, liblzma-dev//' debian/control - dch -a "debian/control: Remove dependency to liblzma-dev as it is not available in lenny. As a consequence, the version provided in the R sources is used" -fi - pbuilder update -pdebuild --debbuildopts '-sa' --buildresult /home/ranke/svn/website/www/ranke/r-cran/$DIST-cran/ -- --distribution $DIST --basetgz /var/cache/pbuilder/$DIST-$ARCH-base.tgz --aptcache /var/cache/pbuilder/$DIST-$ARCH/aptcache --buildplace /var/cache/pbuilder/$DIST-$ARCH/build +pdebuild --debbuildopts '-sa' --buildresult /home/ranke/svn/website/www/ranke/r-cran/$DIST-cran3/ -- --distribution $DIST --basetgz /var/cache/pbuilder/$DIST-$ARCH-base.tgz --aptcache /var/cache/pbuilder/$DIST-$ARCH/aptcache --buildplace /var/cache/pbuilder/$DIST-$ARCH/build if [ $? -ne 0 ]; then exit fi diff --git a/build_jags.sh b/build_jags.sh index 4727dbf..b0c7a19 100644 --- a/build_jags.sh +++ b/build_jags.sh @@ -3,8 +3,6 @@ # Script to facilitate building jags binaries for CRAN in a chroot # Matching CRAN sources must be in /etc/apt/sources.list of the chroot -# Author: Johannes Ranke <jranke@uni-bremen.de> - apt-get update apt-get build-dep jags apt-get source jags diff --git a/build_others.sh b/build_others.sh index 2d4e4f1..9d207c7 100644 --- a/build_others.sh +++ b/build_others.sh @@ -1,11 +1,13 @@ # Author: Johannes Ranke <jranke@uni-bremen.de> apt-get update +apt-get upgrade -# lenny -#for i in cluster foreign lattice mgcv nlme r-cran-class r-cran-spatial r-cran-nnet r-cran-mass kernsmooth rmatrix rodbc rpart survival littler; do # squeeze -for i in cluster foreign lattice mgcv nlme r-cran-class r-cran-spatial r-cran-nnet r-cran-mass kernsmooth rmatrix rodbc rpart survival littler rpy rkward r-cran-rjags; do +# The first three packages are needed for others +for i in r-cran-rjags; do +#for i in cluster foreign r-cran-class r-cran-coda r-cran-spatial r-cran-nnet r-cran-mass kernsmooth mgcv rodbc rpart survival littler rpy rkward r-cran-rjags; do +#for i in lattice rmatrix nlme cluster foreign r-cran-class r-cran-coda r-cran-spatial r-cran-nnet r-cran-mass kernsmooth mgcv rodbc rpart survival littler rpy rkward r-cran-rjags; do apt-get --no-install-recommends build-dep $i apt-get source $i cd $i-* diff --git a/build_r-base.sh b/build_r-base.sh index ca48af3..d659e3a 100644 --- a/build_r-base.sh +++ b/build_r-base.sh @@ -3,8 +3,6 @@ # Script to facilitate building r-base binaries for CRAN in a chroot # Matching CRAN sources must be in /etc/apt/sources.list of the chroot -# Author: Johannes Ranke <jranke@uni-bremen.de> - apt-get update apt-get build-dep r-base apt-get source r-base @@ -1,6 +1,6 @@ # Author: Johannes Ranke <jranke@uni-bremen.de> -for i in boot cluster codetools foreign kernsmooth lattice mgcv nlme r-cran-class r-cran-mass r-cran-nnet r-cran-spatial rmatrix rodbc rpart survival littler rpy rkward jags r-cran-rjags; do +for i in boot cluster codetools foreign kernsmooth lattice mgcv nlme r-cran-class r-cran-coda r-cran-mass r-cran-nnet r-cran-spatial rmatrix rodbc rpart survival littler rpy rkward jags r-cran-rjags; do rm -rf $i-* # build directories leftover from backporting rm $i*.dsc # source package descriptions from Debian unstable rm $i*.diff.gz # source package diffs from Debian unstable diff --git a/move_squeeze64.sh b/move_squeeze64.sh index b3a78b1..eef1808 100644 --- a/move_squeeze64.sh +++ b/move_squeeze64.sh @@ -3,5 +3,4 @@ # Move binary packages built in a chroot to the local repository #mv /var/chroot/squeeze-amd64/home/ranke/svn/r-backports/*squeezecran*_amd64.deb ~/svn/website/www/ranke/r-cran/squeeze-cran -mv *squeezecran*_amd64.deb ~/svn/website/www/ranke/r-cran/squeeze-cran - +mv *squeezecran*_amd64.deb ~/svn/website/www/ranke/r-cran/squeeze-cran3 |