aboutsummaryrefslogblamecommitdiff
path: root/inst/web/schaefer07_complex_case.html
blob: b6d0528a5b1aed043367c6a135bd95036eba86c4 (plain) (tree)
1
2
3
4
5



                          
                                                        




























                                                                                      
                                                    
































































































                                                                                                                                                       
<!DOCTYPE html>
<html lang="en">
  <head>
    <meta charset="utf-8">
<title>schaefer07_complex_case. mkin 0.9.44.9000</title>
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<meta name="author" content="">

<link href="css/bootstrap.css" rel="stylesheet">
<link href="css/bootstrap-responsive.css" rel="stylesheet">
<link href="css/highlight.css" rel="stylesheet">
<link href="css/staticdocs.css" rel="stylesheet">

<!--[if lt IE 9]>
  <script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script>
<![endif]-->

<script type="text/x-mathjax-config">
  MathJax.Hub.Config({
    tex2jax: {
      inlineMath: [ ['$','$'], ["\\(","\\)"] ],
      processEscapes: true
    }
  });
</script>
<script type="text/javascript"
  src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML">
</script>
  </head>

  <body>
    <div class="navbar">
  <div class="navbar-inner">
    <div class="container">
      <a class="brand" href="#">mkin 0.9.44.9000</a>
      <div class="nav">
        <ul class="nav">
          <li><a href="index.html"><i class="icon-home icon-white"></i> Index</a></li>
        </ul>
      </div>
    </div>
  </div>
</div>

    <div class="container">
      <header>
        
      </header>
      
      <h1>
  Metabolism data set used for checking the software quality of KinGUI
</h1>

<div class="row">
  <div class="span8">
    <h2>Usage</h2>
    <pre><div>data(schaefer07_complex_case)</div></pre>
        
    <div class="Description">
      <h2>Description</h2>

      <p>This dataset was used for a comparison of KinGUI and ModelMaker to check the
  software quality of KinGUI in the original publication (Schäfer et al., 2007).
  The results from the fitting are also included.</p>
  
    </div>

    <div class="Format">
      <h2>Format</h2>

      <p>The data set is a data frame with 8 observations on the following 6 variables.
  <dl>
    <dt><code>time</code></dt><dd>a numeric vector</dd></p>
  
      <p><dt><code>parent</code></dt><dd>a numeric vector</dd></p>
  
      <p><dt><code>A1</code></dt><dd>a numeric vector</dd></p>
  
      <p><dt><code>B1</code></dt><dd>a numeric vector</dd></p>
  
      <p><dt><code>C1</code></dt><dd>a numeric vector</dd></p>
  
      <p><dt><code>A2</code></dt><dd>a numeric vector</dd></p>
  
      <p></dl></p>
  
      <p>The results are a data frame with 14 results for different parameter values</p>
  
    </div>

    <div class="References">
      <h2>References</h2>

      <p>Schäfer D, Mikolasch B, Rainbird P and Harvey B (2007). KinGUI: a new kinetic
  software tool for evaluations according to FOCUS degradation kinetics. In: Del
  Re AAM, Capri E, Fragoulis G and Trevisan M (Eds.). Proceedings of the XIII
  Symposium Pesticide Chemistry, Piacenza, 2007, p. 916-923.</p>
  
    </div>
    
    <h2 id="examples">Examples</h2>
    <pre class="examples"><div class='input'>data &lt;- mkin_wide_to_long(schaefer07_complex_case, time = &quot;time&quot;)
model &lt;- mkinmod(
  parent = list(type = &quot;SFO&quot;, to = c(&quot;A1&quot;, &quot;B1&quot;, &quot;C1&quot;), sink = FALSE),
  A1 = list(type = &quot;SFO&quot;, to = &quot;A2&quot;),
  B1 = list(type = &quot;SFO&quot;),
  C1 = list(type = &quot;SFO&quot;),
  A2 = list(type = &quot;SFO&quot;), use_of_ff = &quot;max&quot;)
</div>
<strong class='message'>Successfully compiled differential equation model from auto-generated C code.</strong>
<div class='input'>## Not run: mkinfit(model, data, plot=TRUE)
</div></pre>
  </div>
  <div class="span4">
    <!-- <ul>
      <li>schaefer07_complex_case</li><li>schaefer07_complex_results</li>
    </ul>
    <ul>
      <li>datasets</li>
    </ul> -->
      
        
  </div>
</div>
      
      <footer>
      <p class="pull-right"><a href="#">Back to top</a></p>
<p>Built by <a href="https://github.com/hadley/staticdocs">staticdocs</a>. Styled with <a href="http://twitter.github.com/bootstrap">bootstrap</a>.</p>
      </footer>
    </div>
  </body>
</html>

Contact - Imprint