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authorJohannes Ranke <jranke@uni-bremen.de>2023-04-15 20:00:00 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2023-04-15 20:00:00 +0200
commitf215080efba4097ccdaa2d1208edd36c26d7978a (patch)
tree1acb432251018d9e51dc4640a186ec7227c70ba3 /inst/rmarkdown/templates/hierarchical_kinetics
parent2db19b7657b8f815c65fd4855cacecc91b695c84 (diff)
Increase test coverage
Also, using mkin analytical solutions for more than one observed variable is not supported (but could be if out_values would be reordered).
Diffstat (limited to 'inst/rmarkdown/templates/hierarchical_kinetics')
-rw-r--r--inst/rmarkdown/templates/hierarchical_kinetics/skeleton/skeleton.Rmd16
1 files changed, 14 insertions, 2 deletions
diff --git a/inst/rmarkdown/templates/hierarchical_kinetics/skeleton/skeleton.Rmd b/inst/rmarkdown/templates/hierarchical_kinetics/skeleton/skeleton.Rmd
index cb328308..71d62677 100644
--- a/inst/rmarkdown/templates/hierarchical_kinetics/skeleton/skeleton.Rmd
+++ b/inst/rmarkdown/templates/hierarchical_kinetics/skeleton/skeleton.Rmd
@@ -15,7 +15,6 @@ library(mkin)
library(knitr)
library(saemix)
library(parallel)
-library(readxl)
```
```{r n_cores, cache = FALSE}
@@ -186,6 +185,13 @@ illparms(parent_best_pH_2)
parms(parent_best_pH_2, ci = TRUE) |> kable(digits = 3)
```
+The endpoints corresponding to the median pH in the tested soils
+are shown below.
+
+```{r dependson = "parent-best-pH"}
+endpoints(parent_best_pH_2)
+```
+
```{r}
stopCluster(cl)
```
@@ -280,6 +286,13 @@ plot(path_1_refined)
parms(path_1_refined, ci = TRUE) |> kable(digits = 3)
```
+The pathway endpoints corresponding to the median pH in the tested soils
+are shown below.
+
+```{r dependson = "parent-best-pH"}
+endpoints(parent_best_pH_2)
+```
+
```{r}
stopCluster(cl)
```
@@ -324,7 +337,6 @@ tex_listing(path_1_refined,
## Session info
```{r echo = FALSE, cache = FALSE}
-parallel::stopCluster(cl)
sessionInfo()
```

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