aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
author(no author) <(no author)@d1b72e20-2ee0-0310-a1c4-ad5adbbefcdc>2004-09-08 12:37:23 +0000
committer(no author) <(no author)@d1b72e20-2ee0-0310-a1c4-ad5adbbefcdc>2004-09-08 12:37:23 +0000
commit91c7d76441b309e6b3b38d00e869ad1cea6e5d0e (patch)
treede0ac45b436104918fc7b36cebdcd3226417315d
parent2c5a4d04e567deb2fd97c4e0b1014fb82a15a6b8 (diff)
I built the windows binary package, and thus the compiled help files
are updated. git-svn-id: http://kriemhild.uft.uni-bremen.de/svn/drfit@6 d1b72e20-2ee0-0310-a1c4-ad5adbbefcdc
Diffstat
-rw-r--r--chm/00Index.html2
-rw-r--r--chm/antifoul.html4
-rwxr-xr-xchm/checkplate.html68
-rw-r--r--chm/drdata.html9
-rw-r--r--chm/drfit.chmbin22081 -> 30187 bytes
-rw-r--r--chm/drfit.hhp1
-rw-r--r--chm/drfit.html6
-rw-r--r--chm/drfit.toc8
-rw-r--r--chm/drplot.html22
9 files changed, 104 insertions, 16 deletions
diff --git a/chm/00Index.html b/chm/00Index.html
index 9958f5e..db1b1cd 100644
--- a/chm/00Index.html
+++ b/chm/00Index.html
@@ -14,6 +14,8 @@
<table width="100%">
<tr><td width="25%"><a href="antifoul.html">antifoul</a></td>
<td>Dose-Response data for TBT and Zink Pyrithione in IPC-81 cells</td></tr>
+<tr><td width="25%"><a href="checkplate.html">checkplate</a></td>
+<td>Check raw data from a specified microtiter plate</td></tr>
<tr><td width="25%"><a href="drdata.html">drdata</a></td>
<td>Get dose-response data</td></tr>
<tr><td width="25%"><a href="drfit.html">drfit</a></td>
diff --git a/chm/antifoul.html b/chm/antifoul.html
index 12ba527..810c5e9 100644
--- a/chm/antifoul.html
+++ b/chm/antifoul.html
@@ -24,14 +24,14 @@ February 25, 2004
<h3>Usage</h3>
-<pre>data(rivers)</pre>
+<pre>data(antifoul)</pre>
<h3>Format</h3>
<p>
A dataframe containing 135 and 81 data points for concentrations and responses
-for TBT and Zink Pyrithione, respecitively. Additional data from the database is
+for TBT and Zink Pyrithione, respectively. Additional data from the database is
also present.
</p>
diff --git a/chm/checkplate.html b/chm/checkplate.html
new file mode 100755
index 0000000..d545656
--- /dev/null
+++ b/chm/checkplate.html
@@ -0,0 +1,68 @@
+<html><head><title>Check raw data from a specified microtiter plate</title>
+<link rel="stylesheet" type="text/css" href="Rchm.css">
+</head>
+<body>
+
+<table width="100%"><tr><td>checkplate(drfit)</td><td align="right">R Documentation</td></tr></table><object type="application/x-oleobject" classid="clsid:1e2a7bd0-dab9-11d0-b93a-00c04fc99f9e">
+<param name="keyword" value="R: checkplate">
+<param name="keyword" value=" Check raw data from a specified microtiter plate">
+</object>
+
+
+<h2>Check raw data from a specified microtiter plate</h2>
+
+
+<h3>Description</h3>
+
+<p>
+Report metadata from a specified microtiter plate from a specified database, box
+plot positive and negative (blind) controls, and show the response data on the
+plate.
+</p>
+
+
+<h3>Usage</h3>
+
+<pre>
+ checkplate(plate,db="cytotox")
+</pre>
+
+
+<h3>Arguments</h3>
+
+<table summary="R argblock">
+<tr valign="top"><td><code>plate</code></td>
+<td>
+The number of the plate identifying it within the database.</td></tr>
+<tr valign="top"><td><code>db</code></td>
+<td>
+The database to be used. Currently only "cytotox" of the UFT Department of
+Bioorganic Chemistry is supported.</td></tr>
+</table>
+
+<h3>Value</h3>
+
+<p>
+The function lists a report and shows two graphs.</p>
+
+<h3>Author(s)</h3>
+
+<p>
+Johannes Ranke
+<a href="mailto:jranke@uni-bremen.de">jranke@uni-bremen.de</a>
+<a href="http://www.uft.uni-bremen.de/chemie/ranke">http://www.uft.uni-bremen.de/chemie/ranke</a>
+</p>
+
+
+<h3>Examples</h3>
+
+<pre>
+# Check plate number 1 in the cytotox database
+## Not run: data &lt;- checkplate(1)
+</pre>
+
+
+
+<hr><div align="center"><a href="00Index.html">[Package Contents]</a></div>
+
+</body></html>
diff --git a/chm/drdata.html b/chm/drdata.html
index 7dd4a2b..a2ef9d9 100644
--- a/chm/drdata.html
+++ b/chm/drdata.html
@@ -60,10 +60,11 @@ order to additionally retrieve data which has not yet been checked.</td></tr>
<p>
The function is currently only used for retrieving data from the
mysql database "cytotox" of the UFT Department of Bioorganic Chemistry.
-Additionally to the installation of the RODBC package, it is required to set
-up a ODBC data source with the name "cytotox", using an ODBC driver for mysql,
-probably myODBC. Then, under Unix, you can use iodbc or unixodbc for setting
-up the respective data source with data source name (DSN) "cytotox". For my
+Access to this database is limited to UFT staff. Additionally to the
+installation of the RODBC package, it is required to set up a ODBC data
+source with the name "cytotox", using an ODBC driver for mysql, probably
+myODBC. Then, under Unix, you can use iodbc or unixodbc for setting up the
+respective data source with data source name (DSN) "cytotox". For my
setting using unixodbc, I am using the file &lsquo;<TT>/etc/odbcinst.ini</TT>&rsquo;
containing:
<table summary="Rd table">
diff --git a/chm/drfit.chm b/chm/drfit.chm
index 420ddab..ddded13 100644
--- a/chm/drfit.chm
+++ b/chm/drfit.chm
Binary files differ
diff --git a/chm/drfit.hhp b/chm/drfit.hhp
index f7e719a..40a9b74 100644
--- a/chm/drfit.hhp
+++ b/chm/drfit.hhp
@@ -12,6 +12,7 @@ Full text search stop list file=..\..\..\gnuwin32\help\R.stp
[FILES]
00Index.html
antifoul.html
+checkplate.html
drdata.html
drfit.html
drplot.html
diff --git a/chm/drfit.html b/chm/drfit.html
index 0c67eae..23dd70f 100644
--- a/chm/drfit.html
+++ b/chm/drfit.html
@@ -87,9 +87,9 @@ Johannes Ranke
<h3>Examples</h3>
<pre>
-## Not run: data(antifoul)
-## Not run: r &lt;- drfit(antifoul)
-## Not run: format(r,digits=2)
+data(antifoul)
+r &lt;- drfit(antifoul)
+format(r,digits=2)
</pre>
diff --git a/chm/drfit.toc b/chm/drfit.toc
index ceaaa27..e80cc53 100644
--- a/chm/drfit.toc
+++ b/chm/drfit.toc
@@ -14,6 +14,10 @@
<param name="Local" value="antifoul.html">
</OBJECT>
<LI> <OBJECT type="text/sitemap">
+<param name="Name" value="checkplate">
+<param name="Local" value="checkplate.html">
+</OBJECT>
+<LI> <OBJECT type="text/sitemap">
<param name="Name" value="drdata">
<param name="Local" value="drdata.html">
</OBJECT>
@@ -31,6 +35,10 @@
</OBJECT>
<UL>
<LI> <OBJECT type="text/sitemap">
+<param name="Name" value="Check raw data from a specified microtiter plate">
+<param name="Local" value="checkplate.html">
+</OBJECT>
+<LI> <OBJECT type="text/sitemap">
<param name="Name" value="Dose-Response data for TBT and Zink Pyrithione in IPC-81 cells">
<param name="Local" value="antifoul.html">
</OBJECT>
diff --git a/chm/drplot.html b/chm/drplot.html
index 34ae967..c141a7a 100644
--- a/chm/drplot.html
+++ b/chm/drplot.html
@@ -101,12 +101,20 @@ default value is "default", which produces rainbow colors.
<table summary="R argblock">
<tr valign="top"><td><code>results</code></td>
<td>
-A data frame containing at least one line for each substance. If the data did not
-show a mean response &lt; 0.5 at the highest dose level, the modeltype is set to "none".
-Every successful fit is reported in one line. Parameters of the fitted curves are only
-reported if the fitted EC50 is not higher than the highest dose.</td></tr>
+You will get plots of data and/or the fitted dose-response curves, on the
+screen and/or as postscript files, depending on the parameters.
+</td></tr>
</table>
+<h3>Note</h3>
+
+<p>
+Turn off the colors if you don't like them and don't want to fiddle with
+them. Treatment of legends is quite bad. Be sure all devices are closed
+(e.g. by calling <code>dev.off()</code>) before calling <code>drplot</code> again.
+</p>
+
+
<h3>Author(s)</h3>
<p>
@@ -119,9 +127,9 @@ Johannes Ranke
<h3>Examples</h3>
<pre>
-## Not run: data(antifoul)
-## Not run: r &lt;- drfit(antifoul)
-## Not run: format(r,digits=2)
+data(antifoul)
+r &lt;- drfit(antifoul)
+## Not run: drplot(r,antifoul)
</pre>

Contact - Imprint