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authorJohannes Ranke <jranke@uni-bremen.de>2023-07-21 08:24:12 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2023-07-21 08:32:32 +0200
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parent0bc79f02e99d719be5dbb96ed1591d46c8373c9f (diff)
Maintenance prompted by email from CRAN
- Fix an improper use of 'packageVersion' - Update .Rbuildignore - Fix a link in the README - Static documentation rebuilt by pkgdown::build_site()
Diffstat (limited to 'docs/reference/antifoul.html')
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<h1>Dose-Response data for TBT and Zink Pyrithione in IPC-81 cells</h1>
@@ -115,108 +49,121 @@
February 25, 2004</p>
</div>
- <pre class="usage"><span class='fu'><a href='https://rdrr.io/r/utils/data.html'>data</a></span>(<span class='no'>antifoul</span>)</pre>
-
-
- <h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2>
+ <div id="ref-usage">
+ <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu"><a href="https://rdrr.io/r/utils/data.html" class="external-link">data</a></span><span class="op">(</span><span class="va">antifoul</span><span class="op">)</span></span></code></pre></div>
+ </div>
+ <div id="format">
+ <h2>Format</h2>
<p>A dataframe containing 135 and 81 data points for concentrations and responses
for TBT and Zink Pyrithione, respectively. Some additional columns from the
database are also present.</p>
+ </div>
- <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
- <pre class="examples"><div class='input'><span class='no'>rantifoul.ED50</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='drfit.html'>drfit</a></span>(<span class='no'>antifoul</span>,
- <span class='kw'>linlogit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>logit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>weibull</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>,
- <span class='kw'>chooseone</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>,
- <span class='kw'>showED50</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>EDx</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>10</span>))</div><div class='output co'>#&gt; <span class='message'></span>
-#&gt; <span class='message'>TBT: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#&gt; <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#&gt; <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#&gt; <span class='message'></span>
-#&gt; <span class='message'>Zn Pyrithion: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#&gt; <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#&gt; <span class='message'>Waiting for profiling to be done...</span></div><div class='input'><span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span>(<span class='no'>rantifoul.ED50</span>, <span class='kw'>digits</span> <span class='kw'>=</span> <span class='fl'>5</span>)</div><div class='output co'>#&gt; Substance ndl n lld lhd mtype logED50 2.5% 97.5%
-#&gt; 1 TBT 38 135 -2.7093 2.3979 linlogit -0.15809 -0.26021 -0.050475
-#&gt; 2 TBT 38 135 -2.7093 2.3979 probit -0.16436 -0.26504 -0.056498
-#&gt; 3 TBT 38 135 -2.7093 2.3979 logit -0.16012 -0.26116 -0.052591
-#&gt; 4 TBT 38 135 -2.7093 2.3979 weibull -0.11507 NA NA
-#&gt; 5 Zn Pyrithion 27 81 -2.1072 2.0000 linlogit -0.41329 -0.52932 -0.299799
-#&gt; 6 Zn Pyrithion 27 81 -2.1072 2.0000 probit -0.39792 -0.50783 -0.291563
-#&gt; 7 Zn Pyrithion 27 81 -2.1072 2.0000 logit -0.40035 -0.51049 -0.293501
-#&gt; 8 Zn Pyrithion 27 81 -2.1072 2.0000 weibull -0.38795 NA NA
-#&gt; unit sigma a b c ED50 ED50 2.5% ED50 97.5%
-#&gt; 1 microM 0.19264 -0.15809 1.04065 -0.024165 0.69487 0.54927 0.89028
-#&gt; 2 microM 0.19286 -0.16436 0.67637 NA 0.68493 0.54320 0.87801
-#&gt; 3 microM 0.19199 -0.16012 0.41358 NA 0.69164 0.54808 0.88595
-#&gt; 4 microM 0.18810 0.63743 1.28891 NA 0.76724 NA NA
-#&gt; 5 microM 0.22878 -0.41329 1.74249 0.610900 0.38611 0.29558 0.50142
-#&gt; 6 microM 0.22866 -0.39792 0.41696 NA 0.40002 0.31058 0.51102
-#&gt; 7 microM 0.22802 -0.40035 0.25395 NA 0.39779 0.30868 0.50874
-#&gt; 8 microM 0.23008 0.47647 2.51561 NA 0.40931 NA NA
-#&gt; EDx10
-#&gt; 1 0.085214
-#&gt; 2 0.093077
-#&gt; 3 0.085340
-#&gt; 4 0.053392
-#&gt; 5 0.120233
-#&gt; 6 0.116872
-#&gt; 7 0.110068
-#&gt; 8 0.121166</div><div class='input'>
-<span class='no'>rantifoul.drc</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='drcfit.html'>drcfit</a></span>(<span class='no'>antifoul</span>,
- <span class='kw'>linlogit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>logit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>weibull</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>,
- <span class='kw'>chooseone</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>,
- <span class='kw'>showED50</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>EDx</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>10</span>))</div><div class='output co'>#&gt; <span class='message'></span>
-#&gt; <span class='message'>TBT: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'></span>
-#&gt; <span class='message'>Zn Pyrithion: Fitting data...</span></div><div class='input'><span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span>(<span class='no'>rantifoul.drc</span>, <span class='kw'>digits</span> <span class='kw'>=</span> <span class='fl'>5</span>)</div><div class='output co'>#&gt; Substance ndl n lld lhd mtype logED50 2.5% 97.5%
-#&gt; 1 TBT 38 135 -2.7093 2.3979 linlogit NA NA NA
-#&gt; 2 TBT 38 135 -2.7093 2.3979 probit -0.16436 -0.28178 -0.072022
-#&gt; 3 TBT 38 135 -2.7093 2.3979 logit -0.16012 -0.27782 -0.067603
-#&gt; 4 TBT 38 135 -2.7093 2.3979 weibull -0.13012 -0.23786 -0.043860
-#&gt; 5 Zn Pyrithion 27 81 -2.1072 2.0000 linlogit -0.41330 -0.54457 -0.312631
-#&gt; 6 Zn Pyrithion 27 81 -2.1072 2.0000 probit -0.39792 -0.52005 -0.302705
-#&gt; 7 Zn Pyrithion 27 81 -2.1072 2.0000 logit -0.40035 -0.52324 -0.304676
-#&gt; 8 Zn Pyrithion 27 81 -2.1072 2.0000 weibull -0.37351 -0.49792 -0.276917
-#&gt; unit sigma a b c ED50 ED50 2.5% ED50 97.5%
-#&gt; 1 microM 0.19264 0.71806 1.04061 -0.024169 NA NA NA
-#&gt; 2 microM 0.19286 0.68492 -0.64209 NA 0.68492 0.52267 0.84718
-#&gt; 3 microM 0.19199 0.69165 1.05007 NA 0.69165 0.52744 0.85585
-#&gt; 4 microM 0.18900 -0.13012 0.79816 NA 0.74111 0.57828 0.90394
-#&gt; 5 microM 0.22878 0.30926 1.74257 0.611358 0.38610 0.28538 0.48682
-#&gt; 6 microM 0.22866 0.40002 -1.04159 NA 0.40002 0.30196 0.49808
-#&gt; 7 microM 0.22802 0.39779 1.71015 NA 0.39779 0.29975 0.49582
-#&gt; 8 microM 0.23077 -0.37351 1.19152 NA 0.42315 0.31775 0.52855
-#&gt; EDx10 EDx10 2.5% EDx10 97.5%
-#&gt; 1 NA NA NA
-#&gt; 2 0.093074 0.040308 0.14584
-#&gt; 3 0.085338 0.035963 0.13471
-#&gt; 4 0.069958 0.026197 0.11372
-#&gt; 5 0.120238 0.043513 0.19696
-#&gt; 6 0.116878 0.048151 0.18561
-#&gt; 7 0.110068 0.043085 0.17705
-#&gt; 8 0.087066 0.017958 0.15617</div></pre>
- </div>
- <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
- <h2>Contents</h2>
- <ul class="nav nav-pills nav-stacked">
- <li><a href="#format">Format</a></li>
- <li><a href="#examples">Examples</a></li>
- </ul>
-
+ <div id="ref-examples">
+ <h2>Examples</h2>
+ <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">rantifoul.ED50</span> <span class="op">&lt;-</span> <span class="fu"><a href="drfit.html">drfit</a></span><span class="op">(</span><span class="va">antifoul</span>,</span></span>
+<span class="r-in"><span> linlogit <span class="op">=</span> <span class="cn">TRUE</span>, logit <span class="op">=</span> <span class="cn">TRUE</span>, weibull <span class="op">=</span> <span class="cn">TRUE</span>,</span></span>
+<span class="r-in"><span> chooseone <span class="op">=</span> <span class="cn">FALSE</span>,</span></span>
+<span class="r-in"><span> showED50 <span class="op">=</span> <span class="cn">TRUE</span>, EDx <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">10</span><span class="op">)</span><span class="op">)</span></span></span>
+<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-msg co"><span class="r-pr">#&gt;</span> TBT: Fitting data...</span>
+<span class="r-msg co"><span class="r-pr">#&gt;</span> Waiting for profiling to be done...</span>
+<span class="r-msg co"><span class="r-pr">#&gt;</span> Waiting for profiling to be done...</span>
+<span class="r-msg co"><span class="r-pr">#&gt;</span> Waiting for profiling to be done...</span>
+<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-msg co"><span class="r-pr">#&gt;</span> Zn Pyrithion: Fitting data...</span>
+<span class="r-msg co"><span class="r-pr">#&gt;</span> Waiting for profiling to be done...</span>
+<span class="r-msg co"><span class="r-pr">#&gt;</span> Waiting for profiling to be done...</span>
+<span class="r-msg co"><span class="r-pr">#&gt;</span> Waiting for profiling to be done...</span>
+<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">rantifoul.ED50</span>, digits <span class="op">=</span> <span class="fl">5</span><span class="op">)</span></span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Substance ndl n lld lhd mtype logED50 2.5% 97.5%</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 1 TBT 38 135 -2.7093 2.3979 linlogit -0.15810 -0.26021 -0.050475</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 2 TBT 38 135 -2.7093 2.3979 probit -0.16436 -0.26504 -0.056498</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 3 TBT 38 135 -2.7093 2.3979 logit -0.16012 -0.26116 -0.052591</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 4 TBT 38 135 -2.7093 2.3979 weibull -0.11507 NA NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 5 Zn Pyrithion 27 81 -2.1072 2.0000 linlogit -0.41329 -0.52932 -0.299799</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 6 Zn Pyrithion 27 81 -2.1072 2.0000 probit -0.39792 -0.50783 -0.291563</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 7 Zn Pyrithion 27 81 -2.1072 2.0000 logit -0.40035 -0.51049 -0.293501</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 8 Zn Pyrithion 27 81 -2.1072 2.0000 weibull -0.38795 NA NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> unit sigma a b c ED50 ED50 2.5% ED50 97.5%</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 1 microM 0.19264 -0.15810 1.04066 -0.024161 0.69487 0.54927 0.89028</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 2 microM 0.19286 -0.16436 0.67637 NA 0.68493 0.54320 0.87801</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 3 microM 0.19199 -0.16012 0.41358 NA 0.69164 0.54808 0.88595</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 4 microM 0.18810 0.63743 1.28891 NA 0.76724 NA NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 5 microM 0.22878 -0.41329 1.74249 0.610809 0.38611 0.29558 0.50142</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 6 microM 0.22866 -0.39792 0.41696 NA 0.40002 0.31058 0.51102</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 7 microM 0.22802 -0.40035 0.25395 NA 0.39779 0.30868 0.50874</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 8 microM 0.23008 0.47647 2.51561 NA 0.40931 NA NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> EDx10</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 1 0.085214</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 2 0.093077</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 3 0.085340</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 4 0.053392</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 5 0.120232</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 6 0.116872</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 7 0.110068</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 8 0.121166</span>
+<span class="r-in"><span></span></span>
+<span class="r-in"><span><span class="va">rantifoul.drc</span> <span class="op">&lt;-</span> <span class="fu"><a href="drcfit.html">drcfit</a></span><span class="op">(</span><span class="va">antifoul</span>,</span></span>
+<span class="r-in"><span> linlogit <span class="op">=</span> <span class="cn">TRUE</span>, logit <span class="op">=</span> <span class="cn">TRUE</span>, weibull <span class="op">=</span> <span class="cn">TRUE</span>,</span></span>
+<span class="r-in"><span> chooseone <span class="op">=</span> <span class="cn">FALSE</span>,</span></span>
+<span class="r-in"><span> showED50 <span class="op">=</span> <span class="cn">TRUE</span>, EDx <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">10</span><span class="op">)</span><span class="op">)</span></span></span>
+<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-msg co"><span class="r-pr">#&gt;</span> TBT: Fitting data...</span>
+<span class="r-msg co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-msg co"><span class="r-pr">#&gt;</span> Zn Pyrithion: Fitting data...</span>
+<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">rantifoul.drc</span>, digits <span class="op">=</span> <span class="fl">5</span><span class="op">)</span></span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Substance ndl n lld lhd mtype logED50 2.5% 97.5%</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 1 TBT 38 135 -2.7093 2.3979 linlogit NA NA NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 2 TBT 38 135 -2.7093 2.3979 probit -0.16436 -0.28178 -0.072022</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 3 TBT 38 135 -2.7093 2.3979 logit -0.16012 -0.27782 -0.067603</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 4 TBT 38 135 -2.7093 2.3979 weibull -0.13012 -0.23786 -0.043860</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 5 Zn Pyrithion 27 81 -2.1072 2.0000 linlogit -0.41330 -0.54457 -0.312631</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 6 Zn Pyrithion 27 81 -2.1072 2.0000 probit -0.39792 -0.52005 -0.302705</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 7 Zn Pyrithion 27 81 -2.1072 2.0000 logit -0.40035 -0.52324 -0.304676</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 8 Zn Pyrithion 27 81 -2.1072 2.0000 weibull -0.37351 -0.49792 -0.276917</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> unit sigma a b c ED50 ED50 2.5% ED50 97.5%</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 1 microM 0.19264 0.71806 1.04061 -0.024169 NA NA NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 2 microM 0.19286 0.68492 -0.64209 NA 0.68492 0.52267 0.84718</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 3 microM 0.19199 0.69165 1.05007 NA 0.69165 0.52744 0.85585</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 4 microM 0.18900 -0.13012 0.79816 NA 0.74111 0.57828 0.90394</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 5 microM 0.22878 0.30926 1.74257 0.611358 0.38610 0.28538 0.48682</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 6 microM 0.22866 0.40002 -1.04159 NA 0.40002 0.30196 0.49808</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 7 microM 0.22802 0.39779 1.71015 NA 0.39779 0.29975 0.49582</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 8 microM 0.23077 -0.37351 1.19152 NA 0.42315 0.31775 0.52855</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> EDx10 EDx10 2.5% EDx10 97.5%</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 1 NA NA NA</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 2 0.093074 0.040308 0.14584</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 3 0.085338 0.035963 0.13471</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 4 0.069958 0.026197 0.11372</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 5 0.120238 0.043513 0.19696</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 6 0.116878 0.048151 0.18561</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 7 0.110068 0.043085 0.17705</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 8 0.087066 0.017958 0.15617</span>
+</code></pre></div>
+ </div>
</div>
+ <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
+ <nav id="toc" data-toggle="toc" class="sticky-top"><h2 data-toc-skip>Contents</h2>
+ </nav></div>
</div>
- <footer>
- <div class="copyright">
- <p>Developed by Johannes Ranke.</p>
+ <footer><div class="copyright">
+ <p></p><p>Developed by Johannes Ranke.</p>
</div>
<div class="pkgdown">
- <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.4.1.</p>
+ <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
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