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from the "cytotox" database of the UFT Department of Bioorganic Chemistry on - February 25, 2004" /> -<meta name="twitter:card" content="summary" /> - - - - -<!-- mathjax --> -<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script> -<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script> - -<!--[if lt IE 9]> + from the "cytotox" database of the UFT Department of Bioorganic Chemistry on + February 25, 2004'><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]> <script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script> <script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script> -<![endif]--> - - - - </head> +<![endif]--></head><body data-spy="scroll" data-target="#toc"> + - <body> <div class="container template-reference-topic"> - <header> - <div class="navbar navbar-default navbar-fixed-top" role="navigation"> + <header><div class="navbar navbar-default navbar-fixed-top" role="navigation"> <div class="container"> <div class="navbar-header"> <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false"> @@ -72,35 +20,21 @@ </button> <span class="navbar-brand"> <a class="navbar-link" href="../index.html">drfit</a> - <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.7.3</span> + <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="">0.7.4</span> </span> </div> <div id="navbar" class="navbar-collapse collapse"> - <ul class="nav navbar-nav"> - <li> - <a href="../index.html"> - <span class="fas fa fas fa-home fa-lg"></span> - - </a> -</li> -<li> + <ul class="nav navbar-nav"><li> <a href="../reference/index.html">Reference</a> </li> - </ul> - <ul class="nav navbar-nav navbar-right"> - - </ul> - - </div><!--/.nav-collapse --> + </ul><ul class="nav navbar-nav navbar-right"></ul></div><!--/.nav-collapse --> </div><!--/.container --> </div><!--/.navbar --> - </header> - -<div class="row"> + </header><div class="row"> <div class="col-md-9 contents"> <div class="page-header"> <h1>Dose-Response data for TBT and Zink Pyrithione in IPC-81 cells</h1> @@ -115,108 +49,121 @@ February 25, 2004</p> </div> - <pre class="usage"><span class='fu'><a href='https://rdrr.io/r/utils/data.html'>data</a></span>(<span class='no'>antifoul</span>)</pre> - - - <h2 class="hasAnchor" id="format"><a class="anchor" href="#format"></a>Format</h2> + <div id="ref-usage"> + <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu"><a href="https://rdrr.io/r/utils/data.html" class="external-link">data</a></span><span class="op">(</span><span class="va">antifoul</span><span class="op">)</span></span></code></pre></div> + </div> + <div id="format"> + <h2>Format</h2> <p>A dataframe containing 135 and 81 data points for concentrations and responses for TBT and Zink Pyrithione, respectively. Some additional columns from the database are also present.</p> + </div> - <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2> - <pre class="examples"><div class='input'><span class='no'>rantifoul.ED50</span> <span class='kw'><-</span> <span class='fu'><a href='drfit.html'>drfit</a></span>(<span class='no'>antifoul</span>, - <span class='kw'>linlogit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>logit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>weibull</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, - <span class='kw'>chooseone</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, - <span class='kw'>showED50</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>EDx</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>10</span>))</div><div class='output co'>#> <span class='message'></span> -#> <span class='message'>TBT: Fitting data...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#> <span class='message'></span> -#> <span class='message'>Zn Pyrithion: Fitting data...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#> <span class='message'>Waiting for profiling to be done...</span></div><div class='input'><span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span>(<span class='no'>rantifoul.ED50</span>, <span class='kw'>digits</span> <span class='kw'>=</span> <span class='fl'>5</span>)</div><div class='output co'>#> Substance ndl n lld lhd mtype logED50 2.5% 97.5% -#> 1 TBT 38 135 -2.7093 2.3979 linlogit -0.15809 -0.26021 -0.050475 -#> 2 TBT 38 135 -2.7093 2.3979 probit -0.16436 -0.26504 -0.056498 -#> 3 TBT 38 135 -2.7093 2.3979 logit -0.16012 -0.26116 -0.052591 -#> 4 TBT 38 135 -2.7093 2.3979 weibull -0.11507 NA NA -#> 5 Zn Pyrithion 27 81 -2.1072 2.0000 linlogit -0.41329 -0.52932 -0.299799 -#> 6 Zn Pyrithion 27 81 -2.1072 2.0000 probit -0.39792 -0.50783 -0.291563 -#> 7 Zn Pyrithion 27 81 -2.1072 2.0000 logit -0.40035 -0.51049 -0.293501 -#> 8 Zn Pyrithion 27 81 -2.1072 2.0000 weibull -0.38795 NA NA -#> unit sigma a b c ED50 ED50 2.5% ED50 97.5% -#> 1 microM 0.19264 -0.15809 1.04065 -0.024165 0.69487 0.54927 0.89028 -#> 2 microM 0.19286 -0.16436 0.67637 NA 0.68493 0.54320 0.87801 -#> 3 microM 0.19199 -0.16012 0.41358 NA 0.69164 0.54808 0.88595 -#> 4 microM 0.18810 0.63743 1.28891 NA 0.76724 NA NA -#> 5 microM 0.22878 -0.41329 1.74249 0.610900 0.38611 0.29558 0.50142 -#> 6 microM 0.22866 -0.39792 0.41696 NA 0.40002 0.31058 0.51102 -#> 7 microM 0.22802 -0.40035 0.25395 NA 0.39779 0.30868 0.50874 -#> 8 microM 0.23008 0.47647 2.51561 NA 0.40931 NA NA -#> EDx10 -#> 1 0.085214 -#> 2 0.093077 -#> 3 0.085340 -#> 4 0.053392 -#> 5 0.120233 -#> 6 0.116872 -#> 7 0.110068 -#> 8 0.121166</div><div class='input'> -<span class='no'>rantifoul.drc</span> <span class='kw'><-</span> <span class='fu'><a href='drcfit.html'>drcfit</a></span>(<span class='no'>antifoul</span>, - <span class='kw'>linlogit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>logit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>weibull</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, - <span class='kw'>chooseone</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, - <span class='kw'>showED50</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>EDx</span> <span class='kw'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span>(<span class='fl'>10</span>))</div><div class='output co'>#> <span class='message'></span> -#> <span class='message'>TBT: Fitting data...</span></div><div class='output co'>#> <span class='message'></span> -#> <span class='message'>Zn Pyrithion: Fitting data...</span></div><div class='input'><span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span>(<span class='no'>rantifoul.drc</span>, <span class='kw'>digits</span> <span class='kw'>=</span> <span class='fl'>5</span>)</div><div class='output co'>#> Substance ndl n lld lhd mtype logED50 2.5% 97.5% -#> 1 TBT 38 135 -2.7093 2.3979 linlogit NA NA NA -#> 2 TBT 38 135 -2.7093 2.3979 probit -0.16436 -0.28178 -0.072022 -#> 3 TBT 38 135 -2.7093 2.3979 logit -0.16012 -0.27782 -0.067603 -#> 4 TBT 38 135 -2.7093 2.3979 weibull -0.13012 -0.23786 -0.043860 -#> 5 Zn Pyrithion 27 81 -2.1072 2.0000 linlogit -0.41330 -0.54457 -0.312631 -#> 6 Zn Pyrithion 27 81 -2.1072 2.0000 probit -0.39792 -0.52005 -0.302705 -#> 7 Zn Pyrithion 27 81 -2.1072 2.0000 logit -0.40035 -0.52324 -0.304676 -#> 8 Zn Pyrithion 27 81 -2.1072 2.0000 weibull -0.37351 -0.49792 -0.276917 -#> unit sigma a b c ED50 ED50 2.5% ED50 97.5% -#> 1 microM 0.19264 0.71806 1.04061 -0.024169 NA NA NA -#> 2 microM 0.19286 0.68492 -0.64209 NA 0.68492 0.52267 0.84718 -#> 3 microM 0.19199 0.69165 1.05007 NA 0.69165 0.52744 0.85585 -#> 4 microM 0.18900 -0.13012 0.79816 NA 0.74111 0.57828 0.90394 -#> 5 microM 0.22878 0.30926 1.74257 0.611358 0.38610 0.28538 0.48682 -#> 6 microM 0.22866 0.40002 -1.04159 NA 0.40002 0.30196 0.49808 -#> 7 microM 0.22802 0.39779 1.71015 NA 0.39779 0.29975 0.49582 -#> 8 microM 0.23077 -0.37351 1.19152 NA 0.42315 0.31775 0.52855 -#> EDx10 EDx10 2.5% EDx10 97.5% -#> 1 NA NA NA -#> 2 0.093074 0.040308 0.14584 -#> 3 0.085338 0.035963 0.13471 -#> 4 0.069958 0.026197 0.11372 -#> 5 0.120238 0.043513 0.19696 -#> 6 0.116878 0.048151 0.18561 -#> 7 0.110068 0.043085 0.17705 -#> 8 0.087066 0.017958 0.15617</div></pre> - </div> - <div class="col-md-3 hidden-xs hidden-sm" id="sidebar"> - <h2>Contents</h2> - <ul class="nav nav-pills nav-stacked"> - <li><a href="#format">Format</a></li> - <li><a href="#examples">Examples</a></li> - </ul> - + <div id="ref-examples"> + <h2>Examples</h2> + <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="va">rantifoul.ED50</span> <span class="op"><-</span> <span class="fu"><a href="drfit.html">drfit</a></span><span class="op">(</span><span class="va">antifoul</span>,</span></span> +<span class="r-in"><span> linlogit <span class="op">=</span> <span class="cn">TRUE</span>, logit <span class="op">=</span> <span class="cn">TRUE</span>, weibull <span class="op">=</span> <span class="cn">TRUE</span>,</span></span> +<span class="r-in"><span> chooseone <span class="op">=</span> <span class="cn">FALSE</span>,</span></span> +<span class="r-in"><span> showED50 <span class="op">=</span> <span class="cn">TRUE</span>, EDx <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">10</span><span class="op">)</span><span class="op">)</span></span></span> +<span class="r-msg co"><span class="r-pr">#></span> </span> +<span class="r-msg co"><span class="r-pr">#></span> TBT: Fitting data...</span> +<span class="r-msg co"><span class="r-pr">#></span> Waiting for profiling to be done...</span> +<span class="r-msg co"><span class="r-pr">#></span> Waiting for profiling to be done...</span> +<span class="r-msg co"><span class="r-pr">#></span> Waiting for profiling to be done...</span> +<span class="r-msg co"><span class="r-pr">#></span> </span> +<span class="r-msg co"><span class="r-pr">#></span> Zn Pyrithion: Fitting data...</span> +<span class="r-msg co"><span class="r-pr">#></span> Waiting for profiling to be done...</span> +<span class="r-msg co"><span class="r-pr">#></span> Waiting for profiling to be done...</span> +<span class="r-msg co"><span class="r-pr">#></span> Waiting for profiling to be done...</span> +<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">rantifoul.ED50</span>, digits <span class="op">=</span> <span class="fl">5</span><span class="op">)</span></span></span> +<span class="r-out co"><span class="r-pr">#></span> Substance ndl n lld lhd mtype logED50 2.5% 97.5%</span> +<span class="r-out co"><span class="r-pr">#></span> 1 TBT 38 135 -2.7093 2.3979 linlogit -0.15810 -0.26021 -0.050475</span> +<span class="r-out co"><span class="r-pr">#></span> 2 TBT 38 135 -2.7093 2.3979 probit -0.16436 -0.26504 -0.056498</span> +<span class="r-out co"><span class="r-pr">#></span> 3 TBT 38 135 -2.7093 2.3979 logit -0.16012 -0.26116 -0.052591</span> +<span class="r-out co"><span class="r-pr">#></span> 4 TBT 38 135 -2.7093 2.3979 weibull -0.11507 NA NA</span> +<span class="r-out co"><span class="r-pr">#></span> 5 Zn Pyrithion 27 81 -2.1072 2.0000 linlogit -0.41329 -0.52932 -0.299799</span> +<span class="r-out co"><span class="r-pr">#></span> 6 Zn Pyrithion 27 81 -2.1072 2.0000 probit -0.39792 -0.50783 -0.291563</span> +<span class="r-out co"><span class="r-pr">#></span> 7 Zn Pyrithion 27 81 -2.1072 2.0000 logit -0.40035 -0.51049 -0.293501</span> +<span class="r-out co"><span class="r-pr">#></span> 8 Zn Pyrithion 27 81 -2.1072 2.0000 weibull -0.38795 NA NA</span> +<span class="r-out co"><span class="r-pr">#></span> unit sigma a b c ED50 ED50 2.5% ED50 97.5%</span> +<span class="r-out co"><span class="r-pr">#></span> 1 microM 0.19264 -0.15810 1.04066 -0.024161 0.69487 0.54927 0.89028</span> +<span class="r-out co"><span class="r-pr">#></span> 2 microM 0.19286 -0.16436 0.67637 NA 0.68493 0.54320 0.87801</span> +<span class="r-out co"><span class="r-pr">#></span> 3 microM 0.19199 -0.16012 0.41358 NA 0.69164 0.54808 0.88595</span> +<span class="r-out co"><span class="r-pr">#></span> 4 microM 0.18810 0.63743 1.28891 NA 0.76724 NA NA</span> +<span class="r-out co"><span class="r-pr">#></span> 5 microM 0.22878 -0.41329 1.74249 0.610809 0.38611 0.29558 0.50142</span> +<span class="r-out co"><span class="r-pr">#></span> 6 microM 0.22866 -0.39792 0.41696 NA 0.40002 0.31058 0.51102</span> +<span class="r-out co"><span class="r-pr">#></span> 7 microM 0.22802 -0.40035 0.25395 NA 0.39779 0.30868 0.50874</span> +<span class="r-out co"><span class="r-pr">#></span> 8 microM 0.23008 0.47647 2.51561 NA 0.40931 NA NA</span> +<span class="r-out co"><span class="r-pr">#></span> EDx10</span> +<span class="r-out co"><span class="r-pr">#></span> 1 0.085214</span> +<span class="r-out co"><span class="r-pr">#></span> 2 0.093077</span> +<span class="r-out co"><span class="r-pr">#></span> 3 0.085340</span> +<span class="r-out co"><span class="r-pr">#></span> 4 0.053392</span> +<span class="r-out co"><span class="r-pr">#></span> 5 0.120232</span> +<span class="r-out co"><span class="r-pr">#></span> 6 0.116872</span> +<span class="r-out co"><span class="r-pr">#></span> 7 0.110068</span> +<span class="r-out co"><span class="r-pr">#></span> 8 0.121166</span> +<span class="r-in"><span></span></span> +<span class="r-in"><span><span class="va">rantifoul.drc</span> <span class="op"><-</span> <span class="fu"><a href="drcfit.html">drcfit</a></span><span class="op">(</span><span class="va">antifoul</span>,</span></span> +<span class="r-in"><span> linlogit <span class="op">=</span> <span class="cn">TRUE</span>, logit <span class="op">=</span> <span class="cn">TRUE</span>, weibull <span class="op">=</span> <span class="cn">TRUE</span>,</span></span> +<span class="r-in"><span> chooseone <span class="op">=</span> <span class="cn">FALSE</span>,</span></span> +<span class="r-in"><span> showED50 <span class="op">=</span> <span class="cn">TRUE</span>, EDx <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">10</span><span class="op">)</span><span class="op">)</span></span></span> +<span class="r-msg co"><span class="r-pr">#></span> </span> +<span class="r-msg co"><span class="r-pr">#></span> TBT: Fitting data...</span> +<span class="r-msg co"><span class="r-pr">#></span> </span> +<span class="r-msg co"><span class="r-pr">#></span> Zn Pyrithion: Fitting data...</span> +<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="va">rantifoul.drc</span>, digits <span class="op">=</span> <span class="fl">5</span><span class="op">)</span></span></span> +<span class="r-out co"><span class="r-pr">#></span> Substance ndl n lld lhd mtype logED50 2.5% 97.5%</span> +<span class="r-out co"><span class="r-pr">#></span> 1 TBT 38 135 -2.7093 2.3979 linlogit NA NA NA</span> +<span class="r-out co"><span class="r-pr">#></span> 2 TBT 38 135 -2.7093 2.3979 probit -0.16436 -0.28178 -0.072022</span> +<span class="r-out co"><span class="r-pr">#></span> 3 TBT 38 135 -2.7093 2.3979 logit -0.16012 -0.27782 -0.067603</span> +<span class="r-out co"><span class="r-pr">#></span> 4 TBT 38 135 -2.7093 2.3979 weibull -0.13012 -0.23786 -0.043860</span> +<span class="r-out co"><span class="r-pr">#></span> 5 Zn Pyrithion 27 81 -2.1072 2.0000 linlogit -0.41330 -0.54457 -0.312631</span> +<span class="r-out co"><span class="r-pr">#></span> 6 Zn Pyrithion 27 81 -2.1072 2.0000 probit -0.39792 -0.52005 -0.302705</span> +<span class="r-out co"><span class="r-pr">#></span> 7 Zn Pyrithion 27 81 -2.1072 2.0000 logit -0.40035 -0.52324 -0.304676</span> +<span class="r-out co"><span class="r-pr">#></span> 8 Zn Pyrithion 27 81 -2.1072 2.0000 weibull -0.37351 -0.49792 -0.276917</span> +<span class="r-out co"><span class="r-pr">#></span> unit sigma a b c ED50 ED50 2.5% ED50 97.5%</span> +<span class="r-out co"><span class="r-pr">#></span> 1 microM 0.19264 0.71806 1.04061 -0.024169 NA NA NA</span> +<span class="r-out co"><span class="r-pr">#></span> 2 microM 0.19286 0.68492 -0.64209 NA 0.68492 0.52267 0.84718</span> +<span class="r-out co"><span class="r-pr">#></span> 3 microM 0.19199 0.69165 1.05007 NA 0.69165 0.52744 0.85585</span> +<span class="r-out co"><span class="r-pr">#></span> 4 microM 0.18900 -0.13012 0.79816 NA 0.74111 0.57828 0.90394</span> +<span class="r-out co"><span class="r-pr">#></span> 5 microM 0.22878 0.30926 1.74257 0.611358 0.38610 0.28538 0.48682</span> +<span class="r-out co"><span class="r-pr">#></span> 6 microM 0.22866 0.40002 -1.04159 NA 0.40002 0.30196 0.49808</span> +<span class="r-out co"><span class="r-pr">#></span> 7 microM 0.22802 0.39779 1.71015 NA 0.39779 0.29975 0.49582</span> +<span class="r-out co"><span class="r-pr">#></span> 8 microM 0.23077 -0.37351 1.19152 NA 0.42315 0.31775 0.52855</span> +<span class="r-out co"><span class="r-pr">#></span> EDx10 EDx10 2.5% EDx10 97.5%</span> +<span class="r-out co"><span class="r-pr">#></span> 1 NA NA NA</span> +<span class="r-out co"><span class="r-pr">#></span> 2 0.093074 0.040308 0.14584</span> +<span class="r-out co"><span class="r-pr">#></span> 3 0.085338 0.035963 0.13471</span> +<span class="r-out co"><span class="r-pr">#></span> 4 0.069958 0.026197 0.11372</span> +<span class="r-out co"><span class="r-pr">#></span> 5 0.120238 0.043513 0.19696</span> +<span class="r-out co"><span class="r-pr">#></span> 6 0.116878 0.048151 0.18561</span> +<span class="r-out co"><span class="r-pr">#></span> 7 0.110068 0.043085 0.17705</span> +<span class="r-out co"><span class="r-pr">#></span> 8 0.087066 0.017958 0.15617</span> +</code></pre></div> + </div> </div> + <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar"> + <nav id="toc" data-toggle="toc" class="sticky-top"><h2 data-toc-skip>Contents</h2> + </nav></div> </div> - <footer> - <div class="copyright"> - <p>Developed by Johannes Ranke.</p> + <footer><div class="copyright"> + <p></p><p>Developed by Johannes Ranke.</p> </div> <div class="pkgdown"> - <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.4.1.</p> + <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p> </div> - </footer> - </div> + </footer></div> - </body> -</html> + + </body></html> |