Switch to odbc, reformattting of code

to make it more readable. Also remove outdated hyperlinks from
the help files.

10 files changed, 17 insertions, 23 deletions

diff --git a/man/XY.Rd b/man/XY.Rd
index 82a48fe..54e6bdc 100644
--- a/man/XY.Rd
+++ b/man/XY.Rd
@@ -14,7 +14,4 @@
 \examples{
   \dontrun{demo(XY)}
 }
-\source{
-  \url{http://www.uft.uni-bremen.de/chemie}
-}
 \keyword{datasets}
diff --git a/man/antifoul.Rd b/man/antifoul.Rd
index e782636..7d814a6 100644
--- a/man/antifoul.Rd
+++ b/man/antifoul.Rd
@@ -28,7 +28,4 @@ rantifoul.drc <- drcfit(antifoul,
 print(rantifoul.drc, digits = 5)
 }
 
-\source{
-  \url{http://www.uft.uni-bremen.de/chemie}
-}
 \keyword{datasets}
diff --git a/man/checkcontrols.Rd b/man/checkcontrols.Rd
index 91d2dff..d99c342 100644
--- a/man/checkcontrols.Rd
+++ b/man/checkcontrols.Rd
@@ -6,7 +6,8 @@
   experiments from a specified database.
 }
 \usage{
-  checkcontrols(last = 10, id = NULL, db = "cytotox", 
+  checkcontrols(last = 10, id = NULL, 
+                db = c("cytotox", "enzymes", "ecotox"),
                 celltype = "IPC-81", enzymetype = "AChE", 
                 organism = "Vibrio fischeri",
                 endpoint = "\%", qcc = c("R", "xbar"))
@@ -54,6 +55,5 @@
 \author{
   Johannes Ranke
   \email{jranke@uni-bremen.de}
-  \url{http://www.uft.uni-bremen.de/chemie/ranke}
 }
 \keyword{database}
diff --git a/man/checkexperiment.Rd b/man/checkexperiment.Rd
index 6a682fa..9d365f8 100644
--- a/man/checkexperiment.Rd
+++ b/man/checkexperiment.Rd
@@ -7,8 +7,8 @@
   specified database, box plot controls, and plot the dose-response data.
 }
 \usage{
-  checkplate(id, db = "cytotox")
-  checkexperiment(id, db = "ecotox", endpoint = "\%")
+  checkplate(id, db = c("cytotox", "enzymes"))
+  checkexperiment(id, db = c("ecotox", "cytotox", "enzymes"), endpoint = "\%")
 }
 \arguments{
   \item{id}{
@@ -31,6 +31,5 @@
 \author{
   Johannes Ranke
   \email{jranke@uni-bremen.de}
-  \url{http://www.uft.uni-bremen.de/chemie/ranke}
 }
 \keyword{database}
diff --git a/man/checksubstance.Rd b/man/checksubstance.Rd
index 284ee88..2e4d62d 100644
--- a/man/checksubstance.Rd
+++ b/man/checksubstance.Rd
@@ -6,7 +6,9 @@
   the data.
 }
 \usage{
-  checksubstance(substance, db = "cytotox", experimentator = "\%",
+  checksubstance(substance, 
+    db = c("cytotox", "enzymes", "ecotox"), 
+    experimentator = "\%",
     celltype = "\%", enzymetype = "\%", organism = "\%",
     endpoint = "\%",
     whereClause = "1", ok = "\%")
@@ -52,7 +54,6 @@
 \author{
   Johannes Ranke
   \email{jranke@uni-bremen.de}
-  \url{http://www.uft.uni-bremen.de/chemie/ranke}
 }
 \keyword{database}
 \keyword{internal}
diff --git a/man/drcfit.Rd b/man/drcfit.Rd
index 67462ba..db84875 100644
--- a/man/drcfit.Rd
+++ b/man/drcfit.Rd
@@ -148,7 +148,6 @@ format(r, digits = 2)
 }
 \author{
   Johannes Ranke \email{jranke@uni-bremen.de}
-  \url{http://www.uft.uni-bremen.de/chemie/ranke}
   The functionality of the drc package used under the hood in this function
   was written by Christian Ritz.
 }
diff --git a/man/drdata.Rd b/man/drdata.Rd
index 2bb0b4d..3999fc6 100644
--- a/man/drdata.Rd
+++ b/man/drdata.Rd
@@ -5,8 +5,9 @@
   Get dose-response data from an adequate ODBC data source
 }
 \usage{
-  drdata(substances, experimentator = "\%", db = "cytotox", celltype = "IPC-81",
-    enzymetype="AChE", organism="Vibrio fischeri", endpoint="Luminescence",
+  drdata(substances, experimentator = "\%", db = "cytotox", 
+    celltype = "IPC-81", enzymetype = "AChE", organism = "Vibrio fischeri",
+    endpoint = "Luminescence",
     whereClause = "1", ok = "'ok','no fit'")
 }
 \arguments{
@@ -78,14 +79,17 @@
   }
 }
 \examples{
-# Get cytotoxicity data for Tributyltin and zinc pyrithione, tested with IPC-81
-# cells
-\dontrun{drdata(c("TBT","ZnPT2"))}
+  \dontrun{
+
+  # Get cytotoxicity data for Tributyltin and zinc pyrithione, tested with IPC-81
+  # cells
+  drdata(c("TBT", "ZnPT2"))
+
+  }
 }
 \author{
   Johannes Ranke
   \email{jranke@uni-bremen.de}
-  \url{http://www.uft.uni-bremen.de/chemie/ranke}
 }
 \keyword{IO}
 \keyword{database}
diff --git a/man/drfit.Rd b/man/drfit.Rd
index ec7fa70..b44a20f 100644
--- a/man/drfit.Rd
+++ b/man/drfit.Rd
@@ -177,7 +177,6 @@ format(r, digits = 2)
 \author{
   Johannes Ranke
   \email{jranke@uni-bremen.de}
-  \url{http://www.uft.uni-bremen.de/chemie/ranke}
 }
 \keyword{models}
 \keyword{regression}
diff --git a/man/drplot.Rd b/man/drplot.Rd
index d8d7eb3..559ed8e 100644
--- a/man/drplot.Rd
+++ b/man/drplot.Rd
@@ -130,7 +130,6 @@ drplot(r,antifoul)
 \author{
   Johannes Ranke
   \email{jranke@uni-bremen.de}
-  \url{http://www.uft.uni-bremen.de/chemie/ranke}
 }
 \keyword{models}
 \keyword{regression}
diff --git a/man/linlogitf.Rd b/man/linlogitf.Rd
index 2c9ddc4..a4360d6 100644
--- a/man/linlogitf.Rd
+++ b/man/linlogitf.Rd
@@ -29,7 +29,6 @@
 \author{
   Johannes Ranke
   \email{jranke@uni-bremen.de}
-  \url{http://www.uft.uni-bremen.de/chemie/ranke}
 }
 \keyword{models}
 \keyword{regression}