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authorjranke <jranke@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>2013-11-06 07:37:29 +0000
committerjranke <jranke@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>2013-11-06 07:37:29 +0000
commitddbb670efc25dc528d56a01ac6551411d6e24762 (patch)
tree617da684c6ac4d32a7a8789f39c35347c7bef080
parenta0421f67c70c9857d96bfcd7fc0069efa7d83b37 (diff)
Update of the vignettes
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@140 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
-rw-r--r--vignettes/examples.Rnw4
-rw-r--r--vignettes/examples.pdfbin293678 -> 286406 bytes
-rw-r--r--vignettes/mkin.Rnw2
-rw-r--r--vignettes/mkin.pdfbin163548 -> 163619 bytes
-rw-r--r--vignettes/references.bib8
5 files changed, 8 insertions, 6 deletions
diff --git a/vignettes/examples.Rnw b/vignettes/examples.Rnw
index 4897f7c..f876d14 100644
--- a/vignettes/examples.Rnw
+++ b/vignettes/examples.Rnw
@@ -20,6 +20,7 @@
\SweaveOpts{engine=R, eps=FALSE, keep.source = TRUE}
<<setup, echo = FALSE, results = hide>>=
options(prompt = "R> ")
+options(width = 70)
options(SweaveHooks = list(
cex = function() par(cex.lab = 1.3, cex.axis = 1.3)))
@
@@ -44,6 +45,7 @@ University of Bremen\\
\tableofcontents
+
\textbf{Key words}: Kinetics, FOCUS, nonlinear optimisation
\section{Kinetic evaluations for parent compounds}
@@ -247,7 +249,7 @@ summary(m.L3.DFOP, data = FALSE)
@
Here, a look to the model plot, the confidence intervals of the parameters
-and the correlation matrix suggest that the paramter estimates are reliable, and
+and the correlation matrix suggest that the parameter estimates are reliable, and
the DFOP model can be used as the best-fit model based on the $\chi^2$ error
level criterion for laboratory data L3.
diff --git a/vignettes/examples.pdf b/vignettes/examples.pdf
index bd01239..ff36191 100644
--- a/vignettes/examples.pdf
+++ b/vignettes/examples.pdf
Binary files differ
diff --git a/vignettes/mkin.Rnw b/vignettes/mkin.Rnw
index 22c9c15..5c71e8b 100644
--- a/vignettes/mkin.Rnw
+++ b/vignettes/mkin.Rnw
@@ -60,7 +60,7 @@ metabolites.
Many approaches are possible regarding the evaluation of chemical degradation
data. The \Rpackage{kinfit} package \citep{pkg:kinfit} in \RR{}
-\citep{rcore2012} implements the approach recommended in the kinetics report
+\citep{rcore2013} implements the approach recommended in the kinetics report
provided by the FOrum for Co-ordination of pesticide fate models and their
USe \citep{FOCUS2006, FOCUSkinetics2011} for simple data series for one parent
compound in one compartment.
diff --git a/vignettes/mkin.pdf b/vignettes/mkin.pdf
index 3eebf14..6d7fbfa 100644
--- a/vignettes/mkin.pdf
+++ b/vignettes/mkin.pdf
Binary files differ
diff --git a/vignettes/references.bib b/vignettes/references.bib
index cbd726c..7796000 100644
--- a/vignettes/references.bib
+++ b/vignettes/references.bib
@@ -31,12 +31,12 @@
url = {http://focus.jrc.ec.europa.eu/dk}
}
-@MANUAL{rcore2012,
+@MANUAL{rcore2013,
title = {\textsf{R}: A Language and Environment for Statistical Computing},
author = {{R Development Core Team}},
organization = {R Foundation for Statistical Computing},
address = {Vienna, Austria},
- year = {2012},
+ year = {2013},
note = {{ISBN} 3-900051-07-0},
url = {http://www.R-project.org}
}
@@ -45,7 +45,7 @@
title = {kinfit: {R}outines for fitting simple kinetic models to chemical
degradation data},
author = {Johannes Ranke},
- year = {2012},
+ year = {2013},
url = {http://CRAN.R-project.org}
}
@@ -53,7 +53,7 @@
title = {mkin: {R}outines for fitting kinetic models with one or more state
variables to chemical degradation data},
author = {Johannes Ranke},
- year = {2012},
+ year = {2013},
url = {http://CRAN.R-project.org}
}

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