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authorJohannes Ranke <jranke@uni-bremen.de>2019-01-31 16:55:20 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2019-01-31 16:55:20 +0100
commit3eefecf0adfbb30b8fb895c244dea6903bcb3e9c (patch)
treebb70432fd6f13ca306443047d6911a797757ee96 /docs/articles
parente5453f4d020aa120cabea074120f587f8ea4735f (diff)
Restore NAMESPACE
which was accidentally overwritten by pkgdown -> roxygen
Diffstat (limited to 'docs/articles')
-rw-r--r--docs/articles/FOCUS_D.html14
-rw-r--r--docs/articles/FOCUS_L.html40
-rw-r--r--docs/articles/web_only/compiled_models.html10
3 files changed, 32 insertions, 32 deletions
diff --git a/docs/articles/FOCUS_D.html b/docs/articles/FOCUS_D.html
index deab980c..9acab53a 100644
--- a/docs/articles/FOCUS_D.html
+++ b/docs/articles/FOCUS_D.html
@@ -94,8 +94,8 @@
-<p>This is just a very simple vignette showing how to fit a degradation model for a parent compound with one transformation product using <code>mkin</code>. After loading the library we look a the data. We have observed concentrations in the column named <code>value</code> at the times specified in column <code>time</code> for the two observed variables named <code>parent</code> and <code>m1</code>.</p>
-<div class="sourceCode" id="cb1"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb1-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/library">library</a></span>(<span class="st">"mkin"</span>, <span class="dt">quietly =</span> <span class="ot">TRUE</span>)</a>
+<p>This is just a very simple vignette showing how to fit a degradation model for a parent compound with one transformation product using <code>mkin</code>. After loading the library we look at the data. We have observed concentrations in the column named <code>value</code> at the times specified in column <code>time</code> for the two observed variables named <code>parent</code> and <code>m1</code>.</p>
+<div class="sourceCode" id="cb1"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb1-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/library">library</a></span>(mkin, <span class="dt">quietly =</span> <span class="ot">TRUE</span>)</a>
<a class="sourceLine" id="cb1-2" data-line-number="2"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/print">print</a></span>(FOCUS_<span class="dv">2006</span>_D)</a></code></pre></div>
<pre><code>## name time value
## 1 parent 0 99.46
@@ -161,10 +161,10 @@
<p><img src="FOCUS_D_files/figure-html/plot_2-1.png" width="768"></p>
<p>A comprehensive report of the results is obtained using the <code>summary</code> method for <code>mkinfit</code> objects.</p>
<div class="sourceCode" id="cb10"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb10-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(fit)</a></code></pre></div>
-<pre><code>## mkin version used for fitting: 0.9.47.6
-## R version used for fitting: 3.5.1
-## Date of fit: Fri Nov 23 19:58:46 2018
-## Date of summary: Fri Nov 23 19:58:47 2018
+<pre><code>## mkin version used for fitting: 0.9.47.5
+## R version used for fitting: 3.5.2
+## Date of fit: Thu Jan 31 16:52:37 2019
+## Date of summary: Thu Jan 31 16:52:38 2019
##
## Equations:
## d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent
@@ -172,7 +172,7 @@
##
## Model predictions using solution type deSolve
##
-## Fitted with method Port using 153 model solutions performed in 0.736 s
+## Fitted with method Port using 153 model solutions performed in 0.695 s
##
## Weighting: none
##
diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html
index b53ab0d0..e3ca9aff 100644
--- a/docs/articles/FOCUS_L.html
+++ b/docs/articles/FOCUS_L.html
@@ -111,8 +111,8 @@
<a class="sourceLine" id="cb2-2" data-line-number="2"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L1.SFO)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.5
## R version used for fitting: 3.5.2
-## Date of fit: Thu Jan 31 15:43:40 2019
-## Date of summary: Thu Jan 31 15:43:40 2019
+## Date of fit: Thu Jan 31 16:52:39 2019
+## Date of summary: Thu Jan 31 16:52:39 2019
##
## Equations:
## d_parent/dt = - k_parent_sink * parent
@@ -202,15 +202,15 @@
<div class="sourceCode" id="cb7"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb7-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L1.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.5
## R version used for fitting: 3.5.2
-## Date of fit: Thu Jan 31 15:43:42 2019
-## Date of summary: Thu Jan 31 15:43:42 2019
+## Date of fit: Thu Jan 31 16:52:41 2019
+## Date of summary: Thu Jan 31 16:52:41 2019
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 611 model solutions performed in 1.502 s
+## Fitted with method Port using 611 model solutions performed in 1.49 s
##
## Weighting: none
##
@@ -297,15 +297,15 @@
<div class="sourceCode" id="cb12"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb12-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L2.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.5
## R version used for fitting: 3.5.2
-## Date of fit: Thu Jan 31 15:43:42 2019
-## Date of summary: Thu Jan 31 15:43:42 2019
+## Date of fit: Thu Jan 31 16:52:42 2019
+## Date of summary: Thu Jan 31 16:52:42 2019
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 81 model solutions performed in 0.195 s
+## Fitted with method Port using 81 model solutions performed in 0.198 s
##
## Weighting: none
##
@@ -368,8 +368,8 @@
<div class="sourceCode" id="cb15"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb15-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(m.L2.DFOP, <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.5
## R version used for fitting: 3.5.2
-## Date of fit: Thu Jan 31 15:43:43 2019
-## Date of summary: Thu Jan 31 15:43:43 2019
+## Date of fit: Thu Jan 31 16:52:43 2019
+## Date of summary: Thu Jan 31 16:52:43 2019
##
## Equations:
## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -378,7 +378,7 @@
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 336 model solutions performed in 0.836 s
+## Fitted with method Port using 336 model solutions performed in 0.839 s
##
## Weighting: none
##
@@ -460,8 +460,8 @@
<div class="sourceCode" id="cb21"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb21-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L3[[<span class="st">"DFOP"</span>, <span class="dv">1</span>]])</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.5
## R version used for fitting: 3.5.2
-## Date of fit: Thu Jan 31 15:43:44 2019
-## Date of summary: Thu Jan 31 15:43:45 2019
+## Date of fit: Thu Jan 31 16:52:44 2019
+## Date of summary: Thu Jan 31 16:52:44 2019
##
## Equations:
## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -470,7 +470,7 @@
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 137 model solutions performed in 0.34 s
+## Fitted with method Port using 137 model solutions performed in 0.341 s
##
## Weighting: none
##
@@ -561,15 +561,15 @@
<div class="sourceCode" id="cb26"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb26-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L4[[<span class="st">"SFO"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.5
## R version used for fitting: 3.5.2
-## Date of fit: Thu Jan 31 15:43:45 2019
-## Date of summary: Thu Jan 31 15:43:45 2019
+## Date of fit: Thu Jan 31 16:52:44 2019
+## Date of summary: Thu Jan 31 16:52:45 2019
##
## Equations:
## d_parent/dt = - k_parent_sink * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 46 model solutions performed in 0.109 s
+## Fitted with method Port using 46 model solutions performed in 0.11 s
##
## Weighting: none
##
@@ -621,15 +621,15 @@
<div class="sourceCode" id="cb28"><pre class="sourceCode r"><code class="sourceCode r"><a class="sourceLine" id="cb28-1" data-line-number="1"><span class="kw"><a href="https://www.rdocumentation.org/packages/base/topics/summary">summary</a></span>(mm.L4[[<span class="st">"FOMC"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</a></code></pre></div>
<pre><code>## mkin version used for fitting: 0.9.47.5
## R version used for fitting: 3.5.2
-## Date of fit: Thu Jan 31 15:43:45 2019
-## Date of summary: Thu Jan 31 15:43:45 2019
+## Date of fit: Thu Jan 31 16:52:45 2019
+## Date of summary: Thu Jan 31 16:52:45 2019
##
## Equations:
## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
##
## Model predictions using solution type analytical
##
-## Fitted with method Port using 66 model solutions performed in 0.163 s
+## Fitted with method Port using 66 model solutions performed in 0.162 s
##
## Weighting: none
##
diff --git a/docs/articles/web_only/compiled_models.html b/docs/articles/web_only/compiled_models.html
index d7d76b49..08bb9b44 100644
--- a/docs/articles/web_only/compiled_models.html
+++ b/docs/articles/web_only/compiled_models.html
@@ -126,9 +126,9 @@
<a class="sourceLine" id="cb5-16" data-line-number="16">}</a></code></pre></div>
<pre><code>## Lade nötiges Paket: rbenchmark</code></pre>
<pre><code>## test replications elapsed relative user.self sys.self
-## 3 deSolve, compiled 3 2.331 1.000 2.330 0
-## 1 deSolve, not compiled 3 17.369 7.451 17.360 0
-## 2 Eigenvalue based 3 2.878 1.235 2.876 0
+## 3 deSolve, compiled 3 2.353 1.000 2.352 0
+## 1 deSolve, not compiled 3 17.619 7.488 17.609 0
+## 2 Eigenvalue based 3 2.899 1.232 2.898 0
## user.child sys.child
## 3 0 0
## 1 0 0
@@ -157,8 +157,8 @@
<a class="sourceLine" id="cb8-16" data-line-number="16">}</a></code></pre></div>
<pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre>
<pre><code>## test replications elapsed relative user.self sys.self
-## 2 deSolve, compiled 3 4.120 1.000 4.116 0
-## 1 deSolve, not compiled 3 37.011 8.983 36.993 0
+## 2 deSolve, compiled 3 4.180 1.000 4.177 0
+## 1 deSolve, not compiled 3 37.331 8.931 37.312 0
## user.child sys.child
## 2 0 0
## 1 0 0</code></pre>

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