Static documentation rebuilt by pkgdown

6 files changed, 39 insertions, 39 deletions

diff --git a/docs/articles/FOCUS_D.html b/docs/articles/FOCUS_D.html
index a8002acd..a83c2f44 100644
--- a/docs/articles/FOCUS_D.html
+++ b/docs/articles/FOCUS_D.html
@@ -80,7 +80,7 @@
       <h1>Example evaluation of FOCUS Example Dataset D</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2018-03-11</h4>
+            <h4 class="date">2018-03-21</h4>
           </div>
 
     
diff --git a/docs/articles/FOCUS_L.html b/docs/articles/FOCUS_L.html
index a23876ec..08e144bd 100644
--- a/docs/articles/FOCUS_L.html
+++ b/docs/articles/FOCUS_L.html
@@ -80,7 +80,7 @@
       <h1>Example evaluation of FOCUS Laboratory Data L1 to L3</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2018-03-11</h4>
+            <h4 class="date">2018-03-21</h4>
           </div>
 
     
@@ -102,16 +102,16 @@ FOCUS_<span class="dv">2006</span>_L1_mkin &lt;-<span class="st"> </span><span c
 <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">m.L1.SFO &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mkinfit.html">mkinfit</a></span>(<span class="st">"SFO"</span>, FOCUS_<span class="dv">2006</span>_L1_mkin, <span class="dt">quiet =</span> <span class="ot">TRUE</span>)
 <span class="kw">summary</span>(m.L1.SFO)</code></pre></div>
 <pre><code>## mkin version:    0.9.46.3 
-## R version:       3.4.3 
-## Date of fit:     Sun Mar 11 22:11:58 2018 
-## Date of summary: Sun Mar 11 22:11:58 2018 
+## R version:       3.4.4 
+## Date of fit:     Wed Mar 21 18:16:03 2018 
+## Date of summary: Wed Mar 21 18:16:03 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 37 model solutions performed in 0.235 s
+## Fitted with method Port using 37 model solutions performed in 0.257 s
 ## 
 ## Weighting: none
 ## 
@@ -193,16 +193,16 @@ FOCUS_<span class="dv">2006</span>_L1_mkin &lt;-<span class="st"> </span><span c
 <p><img src="FOCUS_L_files/figure-html/unnamed-chunk-6-1.png" width="576"></p>
 <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(m.L1.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
 <pre><code>## mkin version:    0.9.46.3 
-## R version:       3.4.3 
-## Date of fit:     Sun Mar 11 22:12:01 2018 
-## Date of summary: Sun Mar 11 22:12:01 2018 
+## R version:       3.4.4 
+## Date of fit:     Wed Mar 21 18:16:05 2018 
+## Date of summary: Wed Mar 21 18:16:05 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 611 model solutions performed in 1.458 s
+## Fitted with method Port using 611 model solutions performed in 1.404 s
 ## 
 ## Weighting: none
 ## 
@@ -288,16 +288,16 @@ FOCUS_<span class="dv">2006</span>_L2_mkin &lt;-<span class="st"> </span><span c
 <p><img src="FOCUS_L_files/figure-html/unnamed-chunk-9-1.png" width="672"></p>
 <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(m.L2.FOMC, <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
 <pre><code>## mkin version:    0.9.46.3 
-## R version:       3.4.3 
-## Date of fit:     Sun Mar 11 22:12:01 2018 
-## Date of summary: Sun Mar 11 22:12:01 2018 
+## R version:       3.4.4 
+## Date of fit:     Wed Mar 21 18:16:06 2018 
+## Date of summary: Wed Mar 21 18:16:06 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 81 model solutions performed in 0.158 s
+## Fitted with method Port using 81 model solutions performed in 0.168 s
 ## 
 ## Weighting: none
 ## 
@@ -359,9 +359,9 @@ FOCUS_<span class="dv">2006</span>_L2_mkin &lt;-<span class="st"> </span><span c
 <p><img src="FOCUS_L_files/figure-html/unnamed-chunk-10-1.png" width="672"></p>
 <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(m.L2.DFOP, <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
 <pre><code>## mkin version:    0.9.46.3 
-## R version:       3.4.3 
-## Date of fit:     Sun Mar 11 22:12:02 2018 
-## Date of summary: Sun Mar 11 22:12:02 2018 
+## R version:       3.4.4 
+## Date of fit:     Wed Mar 21 18:16:06 2018 
+## Date of summary: Wed Mar 21 18:16:06 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -370,7 +370,7 @@ FOCUS_<span class="dv">2006</span>_L2_mkin &lt;-<span class="st"> </span><span c
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 336 model solutions performed in 0.681 s
+## Fitted with method Port using 336 model solutions performed in 0.719 s
 ## 
 ## Weighting: none
 ## 
@@ -451,9 +451,9 @@ mm.L3 &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mmkin
 <p>We can extract the summary and plot for <em>e.g.</em> the DFOP fit, using square brackets for indexing which will result in the use of the summary and plot functions working on mkinfit objects.</p>
 <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(mm.L3[[<span class="st">"DFOP"</span>, <span class="dv">1</span>]])</code></pre></div>
 <pre><code>## mkin version:    0.9.46.3 
-## R version:       3.4.3 
-## Date of fit:     Sun Mar 11 22:12:03 2018 
-## Date of summary: Sun Mar 11 22:12:03 2018 
+## R version:       3.4.4 
+## Date of fit:     Wed Mar 21 18:16:07 2018 
+## Date of summary: Wed Mar 21 18:16:07 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) *
@@ -462,7 +462,7 @@ mm.L3 &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mmkin
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 137 model solutions performed in 0.272 s
+## Fitted with method Port using 137 model solutions performed in 0.283 s
 ## 
 ## Weighting: none
 ## 
@@ -552,9 +552,9 @@ mm.L4 &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mmkin
 <p>The <span class="math inline">\(\chi^2\)</span> error level of 3.3% as well as the plot suggest that the SFO model fits very well. The error level at which the <span class="math inline">\(\chi^2\)</span> test passes is slightly lower for the FOMC model. However, the difference appears negligible.</p>
 <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(mm.L4[[<span class="st">"SFO"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
 <pre><code>## mkin version:    0.9.46.3 
-## R version:       3.4.3 
-## Date of fit:     Sun Mar 11 22:12:04 2018 
-## Date of summary: Sun Mar 11 22:12:04 2018 
+## R version:       3.4.4 
+## Date of fit:     Wed Mar 21 18:16:08 2018 
+## Date of summary: Wed Mar 21 18:16:08 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - k_parent_sink * parent
@@ -612,16 +612,16 @@ mm.L4 &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mmkin
 ## parent  106  352</code></pre>
 <div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r"><span class="kw">summary</span>(mm.L4[[<span class="st">"FOMC"</span>, <span class="dv">1</span>]], <span class="dt">data =</span> <span class="ot">FALSE</span>)</code></pre></div>
 <pre><code>## mkin version:    0.9.46.3 
-## R version:       3.4.3 
-## Date of fit:     Sun Mar 11 22:12:04 2018 
-## Date of summary: Sun Mar 11 22:12:04 2018 
+## R version:       3.4.4 
+## Date of fit:     Wed Mar 21 18:16:08 2018 
+## Date of summary: Wed Mar 21 18:16:08 2018 
 ## 
 ## Equations:
 ## d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
 ## 
 ## Model predictions using solution type analytical 
 ## 
-## Fitted with method Port using 66 model solutions performed in 0.13 s
+## Fitted with method Port using 66 model solutions performed in 0.138 s
 ## 
 ## Weighting: none
 ## 
diff --git a/docs/articles/FOCUS_Z.html b/docs/articles/FOCUS_Z.html
index 78a00062..a2b88caa 100644
--- a/docs/articles/FOCUS_Z.html
+++ b/docs/articles/FOCUS_Z.html
@@ -80,7 +80,7 @@
       <h1>Example evaluation of FOCUS dataset Z</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2018-03-11</h4>
+            <h4 class="date">2018-03-21</h4>
           </div>
 
     
diff --git a/docs/articles/compiled_models.html b/docs/articles/compiled_models.html
index 8923acac..19cb806b 100644
--- a/docs/articles/compiled_models.html
+++ b/docs/articles/compiled_models.html
@@ -80,7 +80,7 @@
       <h1>Performance benefit by using compiled model definitions in mkin</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2018-03-11</h4>
+            <h4 class="date">2018-03-21</h4>
           </div>
 
     
@@ -118,9 +118,9 @@ SFO_SFO &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mki
 }</code></pre></div>
 <pre><code>## Lade nötiges Paket: rbenchmark</code></pre>
 <pre><code>##                    test replications elapsed relative user.self sys.self
-## 3     deSolve, compiled            3   1.978    1.000     1.976        0
-## 1 deSolve, not compiled            3  13.541    6.846    13.531        0
-## 2      Eigenvalue based            3   2.332    1.179     2.330        0
+## 3     deSolve, compiled            3   2.155    1.000     2.152        0
+## 1 deSolve, not compiled            3  15.124    7.018    15.109        0
+## 2      Eigenvalue based            3   2.576    1.195     2.574        0
 ##   user.child sys.child
 ## 3          0         0
 ## 1          0         0
@@ -149,14 +149,14 @@ SFO_SFO &lt;-<span class="st"> </span><span class="kw"><a href="../reference/mki
 }</code></pre></div>
 <pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre>
 <pre><code>##                    test replications elapsed relative user.self sys.self
-## 2     deSolve, compiled            3   3.334    1.000     3.331        0
-## 1 deSolve, not compiled            3  29.917    8.973    29.888        0
+## 2     deSolve, compiled            3   3.419    1.000     3.415        0
+## 1 deSolve, not compiled            3  31.159    9.113    31.130        0
 ##   user.child sys.child
 ## 2          0         0
 ## 1          0         0</code></pre>
 <p>Here we get a performance benefit of a factor of 9 using the version of the differential equation model compiled from C code!</p>
 <p>This vignette was built with mkin 0.9.46.3 on</p>
-<pre><code>## R version 3.4.3 (2017-11-30)
+<pre><code>## R version 3.4.4 (2018-03-15)
 ## Platform: x86_64-pc-linux-gnu (64-bit)
 ## Running under: Debian GNU/Linux 9 (stretch)</code></pre>
 <pre><code>## CPU model: AMD Ryzen 7 1700 Eight-Core Processor</code></pre>
diff --git a/docs/articles/mkin.html b/docs/articles/mkin.html
index 7b26b3f1..12ff2e98 100644
--- a/docs/articles/mkin.html
+++ b/docs/articles/mkin.html
@@ -80,7 +80,7 @@
       <h1>Introduction to mkin</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2018-03-11</h4>
+            <h4 class="date">2018-03-21</h4>
           </div>
 
     
diff --git a/docs/articles/twa.html b/docs/articles/twa.html
index 7f4c941e..551cf03f 100644
--- a/docs/articles/twa.html
+++ b/docs/articles/twa.html
@@ -80,7 +80,7 @@
       <h1>Calculation of time weighted average concentrations with mkin</h1>
                         <h4 class="author">Johannes Ranke</h4>
             
-            <h4 class="date">2018-03-11</h4>
+            <h4 class="date">2018-03-21</h4>
           </div>