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authorJohannes Ranke <jranke@uni-bremen.de>2020-05-27 07:57:10 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2020-05-27 07:57:10 +0200
commitf26d5082604402de3604e494e30fe5a2f030aca3 (patch)
treea180d5f345238a6e5d7f3966ca164a8743e6e62a /docs/dev/reference/mkinfit.html
parent8551186f8968a80c801efd91f5dcfb61f12a231e (diff)
Change dev version label to info color
instead of the orange danger color.
Diffstat (limited to 'docs/dev/reference/mkinfit.html')
-rw-r--r--docs/dev/reference/mkinfit.html28
1 files changed, 14 insertions, 14 deletions
diff --git a/docs/dev/reference/mkinfit.html b/docs/dev/reference/mkinfit.html
index 49e896fc..e1e75767 100644
--- a/docs/dev/reference/mkinfit.html
+++ b/docs/dev/reference/mkinfit.html
@@ -80,7 +80,7 @@ likelihood function." />
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-danger" data-toggle="tooltip" data-placement="bottom" title="In-development version">0.9.50.3</span>
+ <span class="version label label-info" data-toggle="tooltip" data-placement="bottom" title="In-development version">0.9.50.3</span>
</span>
</div>
@@ -424,15 +424,15 @@ Degradation Data. <em>Environments</em> 6(12) 124
<span class='no'>fit</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinfit</span>(<span class='st'>"FOMC"</span>, <span class='no'>FOCUS_2006_C</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
<span class='fu'><a href='https://rdrr.io/r/base/summary.html'>summary</a></span>(<span class='no'>fit</span>)</div><div class='output co'>#&gt; mkin version used for fitting: 0.9.50.3
#&gt; R version used for fitting: 4.0.0
-#&gt; Date of fit: Wed May 27 05:54:13 2020
-#&gt; Date of summary: Wed May 27 05:54:13 2020
+#&gt; Date of fit: Wed May 27 07:43:45 2020
+#&gt; Date of summary: Wed May 27 07:43:45 2020
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - (alpha/beta) * 1/((time/beta) + 1) * parent
#&gt;
#&gt; Model predictions using solution type analytical
#&gt;
-#&gt; Fitted using 222 model solutions performed in 0.043 s
+#&gt; Fitted using 222 model solutions performed in 0.044 s
#&gt;
#&gt; Error model: Constant variance
#&gt;
@@ -509,7 +509,7 @@ Degradation Data. <em>Environments</em> 6(12) 124
<span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>))</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'><span class='co'># Fit the model to the FOCUS example dataset D using defaults</span>
<span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span>(<span class='fu'><a href='https://rdrr.io/r/base/system.time.html'>system.time</a></span>(<span class='no'>fit</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinfit</span>(<span class='no'>SFO_SFO</span>, <span class='no'>FOCUS_2006_D</span>,
<span class='kw'>solution_type</span> <span class='kw'>=</span> <span class='st'>"eigen"</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)))</div><div class='output co'>#&gt; <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='output co'>#&gt; user system elapsed
-#&gt; 0.414 0.000 0.418 </div><div class='input'><span class='fu'><a href='parms.html'>parms</a></span>(<span class='no'>fit</span>)</div><div class='output co'>#&gt; parent_0 k_parent k_m1 f_parent_to_m1 sigma
+#&gt; 0.405 0.001 0.407 </div><div class='input'><span class='fu'><a href='parms.html'>parms</a></span>(<span class='no'>fit</span>)</div><div class='output co'>#&gt; parent_0 k_parent k_m1 f_parent_to_m1 sigma
#&gt; 99.598481046 0.098697740 0.005260651 0.514475962 3.125503875 </div><div class='input'><span class='fu'><a href='endpoints.html'>endpoints</a></span>(<span class='no'>fit</span>)</div><div class='output co'>#&gt; $ff
#&gt; parent_m1 parent_sink
#&gt; 0.514476 0.485524
@@ -599,7 +599,7 @@ Degradation Data. <em>Environments</em> 6(12) 124
#&gt; Sum of squared residuals at call 165: 371.2134
#&gt; Sum of squared residuals at call 167: 371.2134
#&gt; Negative log-likelihood at call 177: 97.22429</div><div class='output co'>#&gt; <span class='message'>Optimisation successfully terminated.</span></div><div class='output co'>#&gt; user system elapsed
-#&gt; 0.371 0.001 0.370 </div><div class='input'><span class='fu'><a href='parms.html'>parms</a></span>(<span class='no'>fit.deSolve</span>)</div><div class='output co'>#&gt; parent_0 k_parent k_m1 f_parent_to_m1 sigma
+#&gt; 0.361 0.000 0.361 </div><div class='input'><span class='fu'><a href='parms.html'>parms</a></span>(<span class='no'>fit.deSolve</span>)</div><div class='output co'>#&gt; parent_0 k_parent k_m1 f_parent_to_m1 sigma
#&gt; 99.598480300 0.098697739 0.005260651 0.514475968 3.125503874 </div><div class='input'><span class='fu'><a href='endpoints.html'>endpoints</a></span>(<span class='no'>fit.deSolve</span>)</div><div class='output co'>#&gt; $ff
#&gt; parent_m1 parent_sink
#&gt; 0.514476 0.485524
@@ -633,8 +633,8 @@ Degradation Data. <em>Environments</em> 6(12) 124
<span class='no'>SFO_SFO.ff</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>, <span class='st'>"m1"</span>),
<span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'><a href='mkinsub.html'>mkinsub</a></span>(<span class='st'>"SFO"</span>), <span class='kw'>use_of_ff</span> <span class='kw'>=</span> <span class='st'>"max"</span>)</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'><span class='no'>f.noweight</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinfit</span>(<span class='no'>SFO_SFO.ff</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#&gt; <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'><span class='fu'><a href='https://rdrr.io/r/base/summary.html'>summary</a></span>(<span class='no'>f.noweight</span>)</div><div class='output co'>#&gt; mkin version used for fitting: 0.9.50.3
#&gt; R version used for fitting: 4.0.0
-#&gt; Date of fit: Wed May 27 05:54:19 2020
-#&gt; Date of summary: Wed May 27 05:54:19 2020
+#&gt; Date of fit: Wed May 27 07:43:50 2020
+#&gt; Date of summary: Wed May 27 07:43:50 2020
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - k_parent * parent
@@ -642,7 +642,7 @@ Degradation Data. <em>Environments</em> 6(12) 124
#&gt;
#&gt; Model predictions using solution type analytical
#&gt;
-#&gt; Fitted using 421 model solutions performed in 0.126 s
+#&gt; Fitted using 421 model solutions performed in 0.125 s
#&gt;
#&gt; Error model: Constant variance
#&gt;
@@ -755,8 +755,8 @@ Degradation Data. <em>Environments</em> 6(12) 124
#&gt; 120 m1 25.15 28.78984 -3.640e+00
#&gt; 120 m1 33.31 28.78984 4.520e+00</div><div class='input'><span class='no'>f.obs</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinfit</span>(<span class='no'>SFO_SFO.ff</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>error_model</span> <span class='kw'>=</span> <span class='st'>"obs"</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#&gt; <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'><span class='fu'><a href='https://rdrr.io/r/base/summary.html'>summary</a></span>(<span class='no'>f.obs</span>)</div><div class='output co'>#&gt; mkin version used for fitting: 0.9.50.3
#&gt; R version used for fitting: 4.0.0
-#&gt; Date of fit: Wed May 27 05:54:19 2020
-#&gt; Date of summary: Wed May 27 05:54:19 2020
+#&gt; Date of fit: Wed May 27 07:43:51 2020
+#&gt; Date of summary: Wed May 27 07:43:51 2020
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - k_parent * parent
@@ -764,7 +764,7 @@ Degradation Data. <em>Environments</em> 6(12) 124
#&gt;
#&gt; Model predictions using solution type analytical
#&gt;
-#&gt; Fitted using 978 model solutions performed in 0.33 s
+#&gt; Fitted using 978 model solutions performed in 0.413 s
#&gt;
#&gt; Error model: Variance unique to each observed variable
#&gt;
@@ -892,8 +892,8 @@ Degradation Data. <em>Environments</em> 6(12) 124
#&gt; 120 m1 25.15 28.80429 -3.654e+00
#&gt; 120 m1 33.31 28.80429 4.506e+00</div><div class='input'><span class='no'>f.tc</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinfit</span>(<span class='no'>SFO_SFO.ff</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>error_model</span> <span class='kw'>=</span> <span class='st'>"tc"</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#&gt; <span class='warning'>Warning: Observations with value of zero were removed from the data</span></div><div class='input'><span class='fu'><a href='https://rdrr.io/r/base/summary.html'>summary</a></span>(<span class='no'>f.tc</span>)</div><div class='output co'>#&gt; mkin version used for fitting: 0.9.50.3
#&gt; R version used for fitting: 4.0.0
-#&gt; Date of fit: Wed May 27 05:54:20 2020
-#&gt; Date of summary: Wed May 27 05:54:20 2020
+#&gt; Date of fit: Wed May 27 07:43:52 2020
+#&gt; Date of summary: Wed May 27 07:43:52 2020
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - k_parent * parent

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