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authorJohannes Ranke <jranke@uni-bremen.de>2022-12-15 14:50:28 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2022-12-15 14:50:28 +0100
commita54bd290bc3884d0000c52c1b29bc557825d9eae (patch)
tree841dc41b03035677aac0b288bca4927a0bd18582 /docs/dev/reference/saem.html
parent7c8b3db180be371cb03b9518f14117060fbc4239 (diff)
List random effects correlations in output if any
Update docs
Diffstat (limited to 'docs/dev/reference/saem.html')
-rw-r--r--docs/dev/reference/saem.html21
1 files changed, 17 insertions, 4 deletions
diff --git a/docs/dev/reference/saem.html b/docs/dev/reference/saem.html
index d18cb848..131b168b 100644
--- a/docs/dev/reference/saem.html
+++ b/docs/dev/reference/saem.html
@@ -432,8 +432,8 @@ using <a href="mmkin.html">mmkin</a>.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> saemix version used for fitting: 3.2 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> mkin version used for pre-fitting: 1.2.2 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> R version used for fitting: 4.2.2 </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> Date of fit: Thu Nov 24 08:11:00 2022 </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> Date of summary: Thu Nov 24 08:11:01 2022 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Date of fit: Wed Dec 7 16:22:26 2022 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Date of summary: Wed Dec 7 16:22:26 2022 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Equations:</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *</span>
@@ -448,12 +448,12 @@ using <a href="mmkin.html">mmkin</a>.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Model predictions using solution type analytical </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> Fitted in 8.778 s</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Fitted in 8.508 s</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Using 300, 100 iterations and 10 chains</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Variance model: Constant variance </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> Mean of starting values for individual parameters:</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Starting values for degradation parameters:</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 log_k_A1 f_parent_qlogis log_k1 log_k2 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> 93.8102 -5.3734 -0.9711 -1.8799 -4.2708 </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> g_qlogis </span>
@@ -462,6 +462,19 @@ using <a href="mmkin.html">mmkin</a>.</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> Fixed degradation parameter values:</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> None</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Starting values for random effects (square root of initial entries in omega):</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 log_k_A1 f_parent_qlogis log_k1 log_k2 g_qlogis</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> parent_0 4.941 0.000 0.0000 0.000 0.000 0.0000</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> log_k_A1 0.000 2.551 0.0000 0.000 0.000 0.0000</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> f_parent_qlogis 0.000 0.000 0.7251 0.000 0.000 0.0000</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> log_k1 0.000 0.000 0.0000 1.449 0.000 0.0000</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> log_k2 0.000 0.000 0.0000 0.000 2.228 0.0000</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> g_qlogis 0.000 0.000 0.0000 0.000 0.000 0.7814</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> Starting values for error model parameters:</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> a.1 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> 1 </span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Results:</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> </span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Likelihood computed by importance sampling</span>

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