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authorRanke Johannes <johannes.ranke@agroscope.admin.ch>2023-10-30 17:09:21 +0100
committerRanke Johannes <johannes.ranke@agroscope.admin.ch>2023-10-30 17:09:21 +0100
commitb7901aac76df753ec1213cb02bebea055965ee87 (patch)
treee907e87d81aa07f19e8387acca612026337add75 /docs/reference/mkinmod.html
parent193b46af027c7b30abf7cf215d77517370e5fb2c (diff)
Update static docs
Diffstat (limited to 'docs/reference/mkinmod.html')
-rw-r--r--docs/reference/mkinmod.html11
1 files changed, 7 insertions, 4 deletions
diff --git a/docs/reference/mkinmod.html b/docs/reference/mkinmod.html
index e4761e73..11a87acc 100644
--- a/docs/reference/mkinmod.html
+++ b/docs/reference/mkinmod.html
@@ -21,7 +21,7 @@ components."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">mkin</a>
- <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.2.4</span>
+ <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.2.6</span>
</span>
</div>
@@ -58,6 +58,9 @@ components."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs
<a href="../articles/prebuilt/2022_dmta_pathway.html">Testing hierarchical pathway kinetics with residue data on dimethenamid and dimethenamid-P</a>
</li>
<li>
+ <a href="../articles/prebuilt/2023_mesotrione_parent.html">Testing covariate modelling in hierarchical parent degradation kinetics with residue data on mesotrione</a>
+ </li>
+ <li>
<a href="../articles/prebuilt/2022_cyan_pathway.html">Testing hierarchical pathway kinetics with residue data on cyantraniliprole</a>
</li>
<li>
@@ -266,7 +269,7 @@ in the FOCUS and NAFTA guidance documents are used.</p>
<p>For kinetic models with more than one observed variable, a symbolic solution
of the system of differential equations is included in the resulting
mkinmod object in some cases, speeding up the solution.</p>
-<p>If a C compiler is found by <code><a href="https://r-lib.github.io/pkgbuild/reference/has_compiler.html" class="external-link">pkgbuild::has_compiler()</a></code> and there
+<p>If a C compiler is found by <code><a href="https://pkgbuild.r-lib.org/reference/has_compiler.html" class="external-link">pkgbuild::has_compiler()</a></code> and there
is more than one observed variable in the specification, C code is generated
for evaluating the differential equations, compiled using
<code><a href="https://rdrr.io/pkg/inline/man/cfunction.html" class="external-link">inline::cfunction()</a></code> and added to the resulting mkinmod object.</p>
@@ -330,7 +333,7 @@ Evaluating and Calculating Degradation Kinetics in Environmental Media</p>
<span class="r-in"><span> m1 <span class="op">=</span> <span class="fu">mkinsub</span><span class="op">(</span><span class="st">"SFO"</span>, full_name <span class="op">=</span> <span class="st">"Metabolite M1"</span><span class="op">)</span>,</span></span>
<span class="r-in"><span> name <span class="op">=</span> <span class="st">"SFO_SFO"</span>, dll_dir <span class="op">=</span> <span class="va">DLL_dir</span>, unload <span class="op">=</span> <span class="cn">TRUE</span>, overwrite <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></span>
<span class="r-msg co"><span class="r-pr">#&gt;</span> Temporary DLL for differentials generated and loaded</span>
-<span class="r-msg co"><span class="r-pr">#&gt;</span> Copied DLL from /tmp/RtmpUEfrXw/file723a02cdd855b.so to /home/jranke/.local/share/mkin/SFO_SFO.so</span>
+<span class="r-msg co"><span class="r-pr">#&gt;</span> Copied DLL from /tmp/RtmpkUSV6I/file244bcd2ba24b1a.so to /home/agsad.admin.ch/f80868656/.local/share/mkin/SFO_SFO.so</span>
<span class="r-in"><span><span class="co"># Now we can save the model and restore it in a new session</span></span></span>
<span class="r-in"><span><span class="fu"><a href="https://rdrr.io/r/base/readRDS.html" class="external-link">saveRDS</a></span><span class="op">(</span><span class="va">SFO_SFO.2</span>, file <span class="op">=</span> <span class="st">"~/SFO_SFO.rds"</span><span class="op">)</span></span></span>
<span class="r-in"><span><span class="co"># Terminate the R session here if you would like to check, and then do</span></span></span>
@@ -383,7 +386,7 @@ Evaluating and Calculating Degradation Kinetics in Environmental Media</p>
<span class="r-out co"><span class="r-pr">#&gt;</span> })</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> return(predicted)</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> }</span>
-<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;environment: 0x55555f4ce060&gt;</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> &lt;environment: 0x560630960080&gt;</span>
<span class="r-in"><span></span></span>
<span class="r-in"><span><span class="co"># If we have several parallel metabolites</span></span></span>
<span class="r-in"><span><span class="co"># (compare tests/testthat/test_synthetic_data_for_UBA_2014.R)</span></span></span>

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