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authorJohannes Ranke <jranke@uni-bremen.de>2018-03-09 23:14:39 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2018-03-09 23:14:39 +0100
commit0b677308e3ffbf742880f05cc54da469f3ecc854 (patch)
tree26dab561d6f5a31923b28b5fdf6c1859727dfe7f /docs/reference/transform_odeparms.html
parent5aec8e34680e05671347f7577ae36c9ad8e37063 (diff)
Another rebuild of the static docs
Now with rbenchmark installed, to get results for the compiled_models vignette
Diffstat (limited to 'docs/reference/transform_odeparms.html')
-rw-r--r--docs/reference/transform_odeparms.html18
1 files changed, 3 insertions, 15 deletions
diff --git a/docs/reference/transform_odeparms.html b/docs/reference/transform_odeparms.html
index 630a5103..266db603 100644
--- a/docs/reference/transform_odeparms.html
+++ b/docs/reference/transform_odeparms.html
@@ -27,18 +27,6 @@
<script src="../pkgdown.js"></script>
-<meta property="og:title" content="Functions to transform and backtransform kinetic parameters for fitting — transform_odeparms" />
-
-<meta property="og:description" content="The transformations are intended to map parameters that should only take
- on restricted values to the full scale of real numbers. For kinetic rate
- constants and other paramters that can only take on positive values, a
- simple log transformation is used. For compositional parameters, such as
- the formations fractions that should always sum up to 1 and can not be
- negative, the ilr transformation is used.
-The transformation of sets of formation fractions is fragile, as it supposes
- the same ordering of the components in forward and backward transformation.
- This is no problem for the internal use in mkinfit." />
-<meta name="twitter:card" content="summary" />
<!-- mathjax -->
<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
@@ -185,8 +173,8 @@ The transformation of sets of formation fractions is fragile, as it supposes
<span class='no'>fit</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
<span class='fu'>summary</span>(<span class='no'>fit</span>, <span class='kw'>data</span><span class='kw'>=</span><span class='fl'>FALSE</span>) <span class='co'># See transformed and backtransformed parameters</span></div><div class='output co'>#&gt; mkin version used for fitting: 0.9.47.1
#&gt; R version used for fitting: 3.4.3
-#&gt; Date of fit: Thu Mar 1 14:26:28 2018
-#&gt; Date of summary: Thu Mar 1 14:26:28 2018
+#&gt; Date of fit: Fri Mar 9 23:08:30 2018
+#&gt; Date of summary: Fri Mar 9 23:08:30 2018
#&gt;
#&gt; Equations:
#&gt; d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent
@@ -194,7 +182,7 @@ The transformation of sets of formation fractions is fragile, as it supposes
#&gt;
#&gt; Model predictions using solution type deSolve
#&gt;
-#&gt; Fitted with method Port using 153 model solutions performed in 0.571 s
+#&gt; Fitted with method Port using 153 model solutions performed in 0.657 s
#&gt;
#&gt; Weighting: none
#&gt;

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