Static documentation rebuilt by pkgdown 1.1.0

1 files changed, 27 insertions, 10 deletions

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 <meta property="og:description" content="The transformations are intended to map parameters that should only take
@@ -39,6 +42,9 @@ The transformation of sets of formation fractions is fragile, as it supposes
   the same ordering of the components in forward and backward transformation.
   This is no problem for the internal use in mkinfit." />
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@@ -61,8 +67,12 @@ The transformation of sets of formation fractions is fragile, as it supposes
         <span class="icon-bar"></span>
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-      <a class="navbar-brand" href="../index.html">mkin</a>
+      <span class="navbar-brand">
+        <a class="navbar-link" href="../index.html">mkin</a>
+        <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.9.47.1</span>
+      </span>
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@@ -103,6 +113,7 @@ The transformation of sets of formation fractions is fragile, as it supposes
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@@ -110,12 +121,15 @@ The transformation of sets of formation fractions is fragile, as it supposes
       
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-      <div class="row">
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     <div class="page-header">
     <h1>Functions to transform and backtransform kinetic parameters for fitting</h1>
+    
+    <div class="hidden name"><code>transform_odeparms.Rd</code></div>
     </div>
 
+    <div class="ref-description">
     
     <p>The transformations are intended to map parameters that should only take
   on restricted values to the full scale of real numbers. For kinetic rate
@@ -127,13 +141,14 @@ The transformation of sets of formation fractions is fragile, as it supposes
   the same ordering of the components in forward and backward transformation.
   This is no problem for the internal use in <code><a href='mkinfit.html'>mkinfit</a></code>.</p>
     
+    </div>
 
     <pre class="usage"><span class='fu'>transform_odeparms</span>(<span class='no'>parms</span>, <span class='no'>mkinmod</span>,
                    <span class='kw'>transform_rates</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>transform_fractions</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
 <span class='fu'>backtransform_odeparms</span>(<span class='no'>transparms</span>, <span class='no'>mkinmod</span>,
                        <span class='kw'>transform_rates</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>transform_fractions</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</pre>
     
-    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a> Arguments</h2>
+    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
     <table class="ref-arguments">
     <colgroup><col class="name" /><col class="desc" /></colgroup>
     <tr>
@@ -184,9 +199,9 @@ The transformation of sets of formation fractions is fragile, as it supposes
   <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'>list</span>(<span class='kw'>type</span> <span class='kw'>=</span> <span class='st'>"SFO"</span>))</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'><span class='co'># Fit the model to the FOCUS example dataset D using defaults</span>
 <span class='no'>fit</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span>(<span class='no'>SFO_SFO</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
 <span class='fu'>summary</span>(<span class='no'>fit</span>, <span class='kw'>data</span><span class='kw'>=</span><span class='fl'>FALSE</span>) <span class='co'># See transformed and backtransformed parameters</span></div><div class='output co'>#&gt; mkin version used for fitting:    0.9.47.1 
-#&gt; R version used for fitting:       3.4.4 
-#&gt; Date of fit:     Wed Mar 21 18:14:43 2018 
-#&gt; Date of summary: Wed Mar 21 18:14:43 2018 
+#&gt; R version used for fitting:       3.5.0 
+#&gt; Date of fit:     Wed Jun  6 01:21:47 2018 
+#&gt; Date of summary: Wed Jun  6 01:21:47 2018 
 #&gt; 
 #&gt; Equations:
 #&gt; d_parent/dt = - k_parent_sink * parent - k_parent_m1 * parent
@@ -194,7 +209,7 @@ The transformation of sets of formation fractions is fragile, as it supposes
 #&gt; 
 #&gt; Model predictions using solution type deSolve 
 #&gt; 
-#&gt; Fitted with method Port using 153 model solutions performed in 0.585 s
+#&gt; Fitted with method Port using 153 model solutions performed in 0.628 s
 #&gt; 
 #&gt; Weighting: none
 #&gt; 
@@ -322,6 +337,8 @@ The transformation of sets of formation fractions is fragile, as it supposes
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