Static documentation rebuilt by pkgdown

3 files changed, 211 insertions, 5 deletions

diff --git a/docs/reference/index.html b/docs/reference/index.html
index 6ccc9255..a3547e29 100644
--- a/docs/reference/index.html
+++ b/docs/reference/index.html
@@ -270,6 +270,12 @@ of an mmkin object</p></td>
           <p><code><a href="AIC.mmkin.html">AIC(<i>&lt;mmkin&gt;</i>)</a></code> <code><a href="AIC.mmkin.html">BIC(<i>&lt;mmkin&gt;</i>)</a></code> </p>
         </td>
         <td><p>Calculate the AIC for a column of an mmkin object</p></td>
+      </tr><tr>
+        
+        <td>
+          <p><code><a href="nlme.html">mean_degparms()</a></code> <code><a href="nlme.html">nlme_data()</a></code> <code><a href="nlme.html">nlme_function()</a></code> </p>
+        </td>
+        <td><p>Estimation of parameter distributions from mmkin row objects</p></td>
       </tr>
     </tbody><tbody>
       <tr>
diff --git a/docs/reference/mkinsub.html b/docs/reference/mkinsub.html
index e38c153c..b3be7c2c 100644
--- a/docs/reference/mkinsub.html
+++ b/docs/reference/mkinsub.html
@@ -70,7 +70,7 @@ mkinmod." />
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">mkin</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.49.6</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.9.49.9</span>
       </span>
     </div>
 
@@ -181,10 +181,11 @@ results on other operating systems or system configurations.</p></td>
 <span class='no'>SFO_SFO.2</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span>(
   <span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>, <span class='st'>"m1"</span>),
   <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>))</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'>
-<span class='co'># Now supplying full names</span>
-<span class='no'>SFO_SFO.2</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span>(
-  <span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>, <span class='st'>"m1"</span>, <span class='kw'>full_name</span> <span class='kw'>=</span> <span class='st'>"Test compound"</span>),
-  <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>, <span class='kw'>full_name</span> <span class='kw'>=</span> <span class='st'>"Metabolite M1"</span>))</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'>
+<span class='co'># \dontrun{</span>
+  <span class='co'># Now supplying full names</span>
+  <span class='no'>SFO_SFO.2</span> <span class='kw'>&lt;-</span> <span class='fu'><a href='mkinmod.html'>mkinmod</a></span>(
+    <span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>, <span class='st'>"m1"</span>, <span class='kw'>full_name</span> <span class='kw'>=</span> <span class='st'>"Test compound"</span>),
+    <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>, <span class='kw'>full_name</span> <span class='kw'>=</span> <span class='st'>"Metabolite M1"</span>))</div><div class='output co'>#&gt; <span class='message'>Successfully compiled differential equation model from auto-generated C code.</span></div><div class='input'> # }
 </div></pre>
   </div>
   <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
diff --git a/docs/reference/nlme.html b/docs/reference/nlme.html
new file mode 100644
index 00000000..b939d1c3
--- /dev/null
+++ b/docs/reference/nlme.html
@@ -0,0 +1,199 @@
+<!-- Generated by pkgdown: do not edit by hand -->
+<!DOCTYPE html>
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+<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.9.4/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script>
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+<meta property="og:description" content="This function sets up and attempts to fit a mixed effects model to
+an mmkin row object. An mmkin row object is essentially a list of mkinfit
+objects that have been obtained by fitting the same model to a list of
+datasets." />
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+      <a href="../articles/twa.html">Calculation of time weighted average concentrations with mkin</a>
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+  <div class="col-md-9 contents">
+    <div class="page-header">
+    <h1>Estimation of parameter distributions from mmkin row objects</h1>
+    
+    <div class="hidden name"><code>nlme.Rd</code></div>
+    </div>
+
+    <div class="ref-description">
+    <p>This function sets up and attempts to fit a mixed effects model to
+an mmkin row object. An mmkin row object is essentially a list of mkinfit
+objects that have been obtained by fitting the same model to a list of
+datasets.</p>
+    </div>
+
+    <pre class="usage"><span class='fu'>mean_degparms</span>(<span class='no'>object</span>)
+
+<span class='fu'>nlme_data</span>(<span class='no'>object</span>)
+
+<span class='fu'>nlme_function</span>(<span class='no'>object</span>)</pre>
+
+    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
+    <table class="ref-arguments">
+    <colgroup><col class="name" /><col class="desc" /></colgroup>
+    <tr>
+      <th>object</th>
+      <td><p>An mmkin row object containing several fits of the same model to different datasets</p></td>
+    </tr>
+    </table>
+
+    <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
+
+    <p>A named vector containing mean values of the fitted degradation model parameters</p>
+<p>A groupedData data object</p>
+<p>A function that can be used with nlme</p>
+
+    <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
+    <pre class="examples"></pre>
+  </div>
+  <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
+    <h2>Contents</h2>
+    <ul class="nav nav-pills nav-stacked">
+      <li><a href="#arguments">Arguments</a></li>
+      <li><a href="#value">Value</a></li>
+      <li><a href="#examples">Examples</a></li>
+    </ul>
+
+  </div>
+</div>
+
+
+      <footer>
+      <div class="copyright">
+  <p>Developed by Johannes Ranke.</p>
+</div>
+
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