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authorJohannes Ranke <jranke@uni-bremen.de>2022-10-05 08:10:43 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2022-10-05 08:10:43 +0200
commite7e8105390ebf3d6f034811bc7cce1d9640b7357 (patch)
tree55f79edc01f86530c65eec012b70e6ece205b4db /log/test.log
parent3d0d6af9f87c23ca3e223a21c892c97fe95d346a (diff)
Simplify the removal of random effects
This is achieved by introducing the argument 'no_random_effect' to the saem function.
Diffstat (limited to 'log/test.log')
-rw-r--r--log/test.log20
1 files changed, 10 insertions, 10 deletions
diff --git a/log/test.log b/log/test.log
index df663253..942ed50d 100644
--- a/log/test.log
+++ b/log/test.log
@@ -5,7 +5,7 @@
✔ | 5 | Calculation of Akaike weights
✔ | 3 | Export dataset for reading into CAKE
✔ | 12 | Confidence intervals and p-values [1.0s]
-✔ | 1 12 | Dimethenamid data from 2018 [31.9s]
+✔ | 1 12 | Dimethenamid data from 2018 [31.6s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data
Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
@@ -16,7 +16,7 @@ Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s]
✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3s]
✔ | 1 | Fitting the logistic model [0.2s]
-✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.3s]
+✔ | 7 | Batch fitting and diagnosing hierarchical kinetic models [14.5s]
✔ | 1 12 | Nonlinear mixed-effects models [0.3s]
────────────────────────────────────────────────────────────────────────────────
Skip (test_mixed.R:68:3): saemix results are reproducible for biphasic fits
@@ -26,26 +26,26 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve
✔ | 10 | Special cases of mkinfit calls [0.4s]
✔ | 3 | mkinfit features [0.7s]
✔ | 8 | mkinmod model generation and printing [0.2s]
-✔ | 3 | Model predictions with mkinpredict [0.4s]
-✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.8s]
+✔ | 3 | Model predictions with mkinpredict [0.3s]
+✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.7s]
✔ | 9 | Nonlinear mixed-effects models with nlme [8.6s]
-✔ | 16 | Plotting [9.9s]
+✔ | 16 | Plotting [9.7s]
✔ | 4 | Residuals extracted from mkinfit models
-✔ | 28 | saemix parent models [181.0s]
+✔ | 35 | saemix parent models [191.8s]
✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4s]
✔ | 11 | Processing of residue series
✔ | 7 | Fitting the SFORB model [3.8s]
✔ | 1 | Summaries of old mkinfit objects
✔ | 5 | Summary [0.2s]
-✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.1s]
-✔ | 9 | Hypothesis tests [8.0s]
+✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2s]
+✔ | 9 | Hypothesis tests [7.8s]
✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 279.0 s
+Duration: 288.9 s
── Skipped tests ──────────────────────────────────────────────────────────────
• Fitting this ODE model with saemix takes about 15 minutes on my system (1)
• Fitting with saemix takes around 10 minutes when using deSolve (1)
-[ FAIL 0 | WARN 0 | SKIP 2 | PASS 246 ]
+[ FAIL 0 | WARN 0 | SKIP 2 | PASS 253 ]

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