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authorJohannes Ranke <jranke@uni-bremen.de>2023-02-17 14:44:29 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2023-02-17 14:44:29 +0100
commitd5ff53448c61134c46cc4df9ea88fd86fa376d66 (patch)
tree2332224ea61fd28e58e9e9ff07a414da59df5bff /man/mkinpredict.Rd
parent84e67cd33bc9c47ae4b111873ffe39fed910d3d4 (diff)
Finish adapting to upcoming deSolve
Diffstat (limited to 'man/mkinpredict.Rd')
-rw-r--r--man/mkinpredict.Rd12
1 files changed, 5 insertions, 7 deletions
diff --git a/man/mkinpredict.Rd b/man/mkinpredict.Rd
index d93c0753..ad749fa4 100644
--- a/man/mkinpredict.Rd
+++ b/man/mkinpredict.Rd
@@ -21,7 +21,6 @@ mkinpredict(x, odeparms, odeini, outtimes, ...)
maxsteps = 20000L,
map_output = TRUE,
na_stop = TRUE,
- call_lsoda = NULL,
...
)
@@ -69,7 +68,8 @@ parent compound.}
\link{mkinmod} model is used, even if is present.}
\item{method.ode}{The solution method passed via \link{mkinpredict} to \link{ode}] in
-case the solution type is "deSolve" and we are not using compiled code.}
+case the solution type is "deSolve" and we are not using compiled code.
+When using compiled code, only lsoda is supported.}
\item{atol}{Absolute error tolerance, passed to the ode solver.}
@@ -83,8 +83,6 @@ FALSE). Setting this to FALSE has no effect for analytical solutions,
as these always return mapped output.}
\item{na_stop}{Should it be an error if \link{ode} returns NaN values}
-
-\item{call_lsoda}{The address of the compiled function "call_lsoda"}
}
\value{
A matrix with the numeric solution in wide format
@@ -111,11 +109,11 @@ mkinpredict(SFO, c(k_degradinol = 0.3), c(degradinol = 100), 0:20,
mkinpredict(SFO, c(k_degradinol = 0.3), c(degradinol = 100), 0:20,
solution_type = "analytical")[21,]
mkinpredict(SFO, c(k_degradinol = 0.3), c(degradinol = 100), 0:20,
- method = "lsoda")[21,]
+ method = "lsoda", use_compiled = FALSE)[21,]
mkinpredict(SFO, c(k_degradinol = 0.3), c(degradinol = 100), 0:20,
- method = "ode45")[21,]
+ method = "ode45", use_compiled = FALSE)[21,]
mkinpredict(SFO, c(k_degradinol = 0.3), c(degradinol = 100), 0:20,
- method = "rk4")[21,]
+ method = "rk4", use_compiled = FALSE)[21,]
# rk4 is not as precise here
# The number of output times used to make a lot of difference until the

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