aboutsummaryrefslogtreecommitdiff
path: root/test.log
diff options
context:
space:
mode:
authorJohannes Ranke <jranke@uni-bremen.de>2021-04-21 13:11:47 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2021-04-21 13:11:47 +0200
commitc74b79c983fe9fc872bac1262040e82f16049477 (patch)
treea071ede8d02b1e1db07527a14afb2313cba9f69e /test.log
parent3a5463672c297b37c3c9135c8b144c48744c05d0 (diff)
Version 1.0.4 published yesterdayv1.0.4
Diffstat (limited to 'test.log')
-rw-r--r--test.log43
1 files changed, 25 insertions, 18 deletions
diff --git a/test.log b/test.log
index b49088e5..a8b42364 100644
--- a/test.log
+++ b/test.log
@@ -1,27 +1,33 @@
-Loading mkin
+ℹ Loading mkin
Loading required package: parallel
-Testing mkin
+ℹ Testing mkin
✔ | OK F W S | Context
✔ | 5 | AIC calculation
-✔ | 2 | Export dataset for reading into CAKE
-✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [1.0 s]
-✔ | 4 | Calculation of FOCUS chi2 error levels [0.5 s]
-✔ | 7 | Fitting the SFORB model [3.5 s]
-✔ | 5 | Analytical solutions for coupled models [3.1 s]
+✔ | 5 | Analytical solutions for coupled models [3.2 s]
✔ | 5 | Calculation of Akaike weights
-✔ | 12 | Confidence intervals and p-values [1.0 s]
-✔ | 14 | Error model fitting [4.2 s]
+✔ | 2 | Export dataset for reading into CAKE
+✔ | 12 | Confidence intervals and p-values [1.3 s]
+✔ | 14 | Error model fitting [4.3 s]
✔ | 5 | Time step normalisation
+✔ | 4 | Calculation of FOCUS chi2 error levels [0.5 s]
+✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.7 s]
✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3 s]
✔ | 1 | Fitting the logistic model [0.2 s]
✔ | 5 | Nonlinear mixed-effects models [0.1 s]
✔ | 2 | Test dataset classes mkinds and mkindsg
-✔ | 1 | mkinfit features [0.3 s]
✔ | 10 | Special cases of mkinfit calls [0.3 s]
+✔ | 1 | mkinfit features [0.3 s]
✔ | 8 | mkinmod model generation and printing [0.2 s]
-✔ | 3 | Model predictions with mkinpredict [0.4 s]
-✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.6 s]
-✔ | 9 | Nonlinear mixed-effects models [7.9 s]
+✔ | 3 | Model predictions with mkinpredict [0.3 s]
+✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.7 s]
+✖ | 7 1 | Nonlinear mixed-effects models [1.9 s]
+────────────────────────────────────────────────────────────────────────────────
+Error (test_nlme.R:116:3): nlme_function works correctly in other cases
+Error: unused argument ("sysname")
+Backtrace:
+ 1. mkin::mmkin("SFO", ds_me_sfo_5, quiet = TRUE) test_nlme.R:116:2
+ 2. parallel::mclapply(...) /home/jranke/git/mkin/R/mmkin.R:118:4
+────────────────────────────────────────────────────────────────────────────────
✖ | 10 4 | Plotting [1.7 s]
────────────────────────────────────────────────────────────────────────────────
Failure (test_plot.R:20:3): Plotting mkinfit, mmkin and mixed model objects is reproducible
@@ -42,13 +48,14 @@ Figures don't match: plot-res-for-focus-d.svg
────────────────────────────────────────────────────────────────────────────────
✔ | 4 | Residuals extracted from mkinfit models
✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5 s]
-✔ | 4 | Summary [0.1 s]
+✔ | 7 | Fitting the SFORB model [3.6 s]
✔ | 1 | Summaries of old mkinfit objects
+✔ | 4 | Summary [0.1 s]
✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2 s]
-✔ | 9 | Hypothesis tests [8.3 s]
-✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.5 s]
+✔ | 9 | Hypothesis tests [8.1 s]
+✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.4 s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 41.0 s
+Duration: 35.2 s
-[ FAIL 4 | WARN 0 | SKIP 0 | PASS 170 ]
+[ FAIL 5 | WARN 0 | SKIP 0 | PASS 168 ]

Contact - Imprint