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authorJohannes Ranke <jranke@uni-bremen.de>2020-05-10 21:53:00 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2020-05-10 21:53:00 +0200
commitd113cd79b178fdc91aecb894707ed356129dfb75 (patch)
treedc28e049e94eb3ee9745f9cd86387de96a894c93 /test.log
parentefab37957381919c21d874906ce870f4941c760a (diff)
Default to analytical for coupled models if available
This revealed that transforming rates is necessary for fitting the analytical solution of the SFO-SFO model to the FOCUS D dataset. Benchmarks show that fitting coupled models with deSolve got a bit slower through the latest changes
Diffstat (limited to 'test.log')
-rw-r--r--test.log20
1 files changed, 10 insertions, 10 deletions
diff --git a/test.log b/test.log
index 7788f109..2a116058 100644
--- a/test.log
+++ b/test.log
@@ -2,33 +2,33 @@ Loading mkin
Testing mkin
✔ | OK F W S | Context
✔ | 2 | Export dataset for reading into CAKE
-✔ | 13 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [3.3 s]
-✔ | 4 | Calculation of FOCUS chi2 error levels [2.0 s]
-✔ | 7 | Fitting the SFORB model [9.1 s]
-✔ | 1 | Analytical solutions for coupled models [1.1 s]
+✔ | 13 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [2.5 s]
+✔ | 4 | Calculation of FOCUS chi2 error levels [0.4 s]
+✔ | 7 | Fitting the SFORB model [9.0 s]
+✔ | 1 | Analytical solutions for coupled models [0.2 s]
✔ | 5 | Calculation of Akaike weights
✔ | 10 | Confidence intervals and p-values [1.0 s]
-✔ | 14 | Error model fitting [3.7 s]
+✔ | 14 | Error model fitting [3.8 s]
✔ | 6 | Test fitting the decline of metabolites from their maximum [0.2 s]
✔ | 1 | Fitting the logistic model [0.2 s]
✔ | 1 | Test dataset class mkinds used in gmkin
✔ | 12 | Special cases of mkinfit calls [0.6 s]
✔ | 8 | mkinmod model generation and printing [0.2 s]
✔ | 3 | Model predictions with mkinpredict [0.4 s]
-✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.4 s]
+✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.3 s]
✔ | 9 | Nonlinear mixed-effects models [12.1 s]
✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.4 s]
✔ | 3 | Summary
-✔ | 14 | Plotting [3.5 s]
+✔ | 14 | Plotting [3.6 s]
✔ | 4 | AIC calculation
✔ | 4 | Residuals extracted from mkinfit models
✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [4.2 s]
✔ | 1 | Summaries of old mkinfit objects
-✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [6.4 s]
-✔ | 9 | Hypothesis tests [17.8 s]
+✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [6.3 s]
+✔ | 9 | Hypothesis tests [17.7 s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 69.9 s
+Duration: 66.3 s
OK: 157
Failed: 0

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