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authorJohannes Ranke <jranke@uni-bremen.de>2021-01-06 20:34:52 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2021-01-06 20:38:29 +0100
commitf99bdd8697c3bfbd432a320774a4692fd0e1241a (patch)
treef2f03f30d3fa3f25780f21611ec407b7a90ad2eb /tests/testthat/summary_nlme_biphasic_s.txt
parentd28ce9f8ad6f9573e403ebd8eb637ecd5e5b0e02 (diff)
Make saemix and corresponding tests optional
Address release critical check and test issues
Diffstat (limited to 'tests/testthat/summary_nlme_biphasic_s.txt')
-rw-r--r--tests/testthat/summary_nlme_biphasic_s.txt42
1 files changed, 21 insertions, 21 deletions
diff --git a/tests/testthat/summary_nlme_biphasic_s.txt b/tests/testthat/summary_nlme_biphasic_s.txt
index f9171748..65aead62 100644
--- a/tests/testthat/summary_nlme_biphasic_s.txt
+++ b/tests/testthat/summary_nlme_biphasic_s.txt
@@ -17,15 +17,15 @@ Data:
Model predictions using solution type analytical
-Fitted in test time 0 s using 2 iterations
+Fitted in test time 0 s using 3 iterations
Variance model: Constant variance
Mean of starting values for individual parameters:
parent_0 log_k_m1 f_parent_qlogis log_k1 log_k2
- 100.70 -6.30 -0.08 -3.09 -3.95
+ 100.70 -5.35 -0.08 -2.68 -4.37
g_qlogis
- 0.03
+ -0.33
Fixed degradation parameter values:
value type
@@ -34,40 +34,40 @@ m1_0 0 state
Results:
AIC BIC logLik
- 2711 2766 -1343
+ 2683 2738 -1329
Optimised, transformed parameters with symmetric confidence intervals:
lower est. upper
-parent_0 99.5 100.37 101.23
-log_k_m1 -6.5 -6.23 -5.94
-f_parent_qlogis -0.2 -0.08 0.08
-log_k1 -3.6 -3.22 -2.84
-log_k2 -4.5 -4.10 -3.68
-g_qlogis -0.4 -0.10 0.17
+parent_0 99.6 100.43 101.26
+log_k_m1 -5.5 -5.34 -5.18
+f_parent_qlogis -0.3 -0.08 0.09
+log_k1 -3.2 -2.90 -2.60
+log_k2 -4.6 -4.34 -4.07
+g_qlogis -0.5 -0.19 0.08
Correlation:
prnt_0 lg_k_1 f_prn_ log_k1 log_k2
-log_k_m1 -0.185
-f_parent_qlogis -0.161 0.405
-log_k1 0.056 -0.014 -0.016
-log_k2 0.025 0.011 -0.004 0.026
-g_qlogis -0.032 -0.046 -0.012 -0.109 -0.103
+log_k_m1 -0.177
+f_parent_qlogis -0.164 0.385
+log_k1 0.108 -0.017 -0.025
+log_k2 0.036 0.054 0.008 0.096
+g_qlogis -0.068 -0.110 -0.030 -0.269 -0.267
Random effects:
Formula: list(parent_0 ~ 1, log_k_m1 ~ 1, f_parent_qlogis ~ 1, log_k1 ~ 1, log_k2 ~ 1, g_qlogis ~ 1)
Level: ds
Structure: Diagonal
parent_0 log_k_m1 f_parent_qlogis log_k1 log_k2 g_qlogis Residual
-StdDev: 1 2e-04 0.3 0.7 0.8 0.3 3
+StdDev: 1 0.1 0.3 0.6 0.5 0.3 3
Backtransformed parameters with asymmetric confidence intervals:
lower est. upper
parent_0 1e+02 1e+02 1e+02
-k_m1 1e-03 2e-03 3e-03
+k_m1 4e-03 5e-03 6e-03
f_parent_to_m1 4e-01 5e-01 5e-01
-k1 3e-02 4e-02 6e-02
-k2 1e-02 2e-02 3e-02
+k1 4e-02 6e-02 7e-02
+k2 1e-02 1e-02 2e-02
g 4e-01 5e-01 5e-01
Resulting formation fractions:
@@ -77,5 +77,5 @@ parent_sink 0.5
Estimated disappearance times:
DT50 DT90 DT50back DT50_k1 DT50_k2
-parent 27 105 31 17 42
-m1 352 1171 NA NA NA
+parent 26 131 39 13 53
+m1 144 479 NA NA NA

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