Some more tests

1 files changed, 77 insertions, 0 deletions

diff --git a/tests/testthat/summary_saem_biphasic_s.txt b/tests/testthat/summary_saem_biphasic_s.txt
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+saemix version used for fitting:      Dummy 0.0 for testing 
+mkin version used for pre-fitting:  Dummy 0.0 for testing 
+R version used for fitting:         Dummy R version for testing 
+Date of fit:     Dummy date for testing 
+Date of summary: Dummy date for testing 
+
+Equations:
+d_parent/dt = - ((k1 * g * exp(-k1 * time) + k2 * (1 - g) * exp(-k2 *
+           time)) / (g * exp(-k1 * time) + (1 - g) * exp(-k2 * time)))
+           * parent
+d_m1/dt = + f_parent_to_m1 * ((k1 * g * exp(-k1 * time) + k2 * (1 - g)
+           * exp(-k2 * time)) / (g * exp(-k1 * time) + (1 - g) *
+           exp(-k2 * time))) * parent - k_m1 * m1
+
+Data:
+509 observations of 2 variable(s) grouped in 15 datasets
+
+Model predictions using solution type analytical 
+
+Fitted in test time 0 s using 300, 100 iterations
+
+Variance model: Constant variance 
+
+Mean of starting values for individual parameters:
+      parent_0           k_m1 f_parent_to_m1             k1             k2 
+       1.0e+02        1.8e-03        4.8e-01        4.5e-02        1.9e-02 
+             g 
+       5.1e-01 
+
+Fixed degradation parameter values:
+None
+
+Results:
+
+Likelihood computed by importance sampling
+   AIC  BIC logLik
+  2692 2702  -1333
+
+Optimised parameters:
+                  est.   lower   upper
+parent_0       1.0e+02 99.3030 1.0e+02
+k_m1           2.2e-03  0.0016 2.8e-03
+f_parent_to_m1 4.9e-01  0.4477 5.3e-01
+k1             4.0e-02  0.0239 5.6e-02
+k2             1.5e-02  0.0085 2.2e-02
+g              5.0e-01  0.3805 6.2e-01
+
+Correlation: 
+               prnt_0 k_m1   f_p__1 k1     k2    
+k_m1           -0.152                            
+f_parent_to_m1 -0.138  0.396                     
+k1              0.085 -0.036 -0.026              
+k2              0.005  0.067  0.018 -0.043       
+g              -0.075 -0.113 -0.029 -0.248 -0.263
+
+Random effects:
+                  est. lower upper
+SD.parent_0       1.23  0.39  2.07
+SD.k_m1           0.14 -0.48  0.75
+SD.f_parent_to_m1 0.28  0.17  0.39
+SD.k1             0.71  0.42  1.00
+SD.k2             0.78  0.47  1.09
+SD.g              0.27 -0.33  0.86
+
+Variance model:
+    est. lower upper
+a.1  2.7   2.6   2.9
+
+Resulting formation fractions:
+              ff
+parent_m1   0.49
+parent_sink 0.51
+
+Estimated disappearance times:
+       DT50 DT90 DT50back DT50_k1 DT50_k2
+parent   27  110       33      17      46
+m1      318 1055       NA      NA      NA