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| author | Johannes Ranke <jranke@uni-bremen.de> | 2015-06-23 11:44:00 +0200 |
|---|---|---|
| committer | Johannes Ranke <jranke@uni-bremen.de> | 2015-06-23 11:44:00 +0200 |
| commit | c6759635fbea7f541d421b3de78f0d8868856486 (patch) | |
| tree | 7a6d602aa505aedf6ef35a0afb2541e67b245ee1 /vignettes/FOCUS_D.html | |
| parent | 6c62c42eb57631aa0f4ab7e008621ffb519bd7be (diff) | |
Vignettes rebuilt by staticdocs::build_site() for static documentation on r-forge
Diffstat (limited to 'vignettes/FOCUS_D.html')
| -rw-r--r-- | vignettes/FOCUS_D.html | 14 |
1 files changed, 7 insertions, 7 deletions
diff --git a/vignettes/FOCUS_D.html b/vignettes/FOCUS_D.html index 45c5810a..099004ad 100644 --- a/vignettes/FOCUS_D.html +++ b/vignettes/FOCUS_D.html @@ -10,7 +10,7 @@ <meta name="author" content="Johannes Ranke" /> -<meta name="date" content="2015-06-22" /> +<meta name="date" content="2015-06-23" /> <title>Example evaluation of FOCUS Example Dataset D</title> @@ -64,7 +64,7 @@ img { <div id="header"> <h1 class="title">Example evaluation of FOCUS Example Dataset D</h1> <h4 class="author"><em>Johannes Ranke</em></h4> -<h4 class="date"><em>2015-06-22</em></h4> +<h4 class="date"><em>2015-06-23</em></h4> </div> @@ -117,9 +117,9 @@ print(FOCUS_2006_D)</code></pre> ## 43 m1 120 25.15 ## 44 m1 120 33.31</code></pre> <p>Next we specify the degradation model: The parent compound degrades with simple first-order kinetics (SFO) to one metabolite named m1, which also degrades with SFO kinetics.</p> -<p>The call to mkinmod returns a degradation model. The differential equations represented in R code can be found in the character vector <code>$diffs</code> of the <code>mkinmod</code> object. If the gcc compiler is installed and functional, the differential equation model will be compiled from auto-generated C code.</p> +<p>The call to mkinmod returns a degradation model. The differential equations represented in R code can be found in the character vector <code>$diffs</code> of the <code>mkinmod</code> object. If a C compiler (gcc) is installed and functional, the differential equation model will be compiled from auto-generated C code.</p> <pre class="r"><code>SFO_SFO <- mkinmod(parent = mkinsub("SFO", "m1"), m1 = mkinsub("SFO"))</code></pre> -<pre><code>## Compiling differential equation model from auto-generated C code...</code></pre> +<pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre> <pre class="r"><code>print(SFO_SFO$diffs)</code></pre> <pre><code>## parent ## "d_parent = - k_parent_sink * parent - k_parent_m1 * parent" @@ -137,8 +137,8 @@ print(FOCUS_2006_D)</code></pre> <pre class="r"><code>summary(fit)</code></pre> <pre><code>## mkin version: 0.9.37 ## R version: 3.2.1 -## Date of fit: Mon Jun 22 23:02:24 2015 -## Date of summary: Mon Jun 22 23:02:25 2015 +## Date of fit: Tue Jun 23 11:42:55 2015 +## Date of summary: Tue Jun 23 11:42:55 2015 ## ## Equations: ## d_parent = - k_parent_sink * parent - k_parent_m1 * parent @@ -146,7 +146,7 @@ print(FOCUS_2006_D)</code></pre> ## ## Model predictions using solution type deSolve ## -## Fitted with method Port using 153 model solutions performed in 0.772 s +## Fitted with method Port using 153 model solutions performed in 0.719 s ## ## Weighting: none ## |