diff options
Diffstat (limited to 'test.log')
| -rw-r--r-- | test.log | 49 |
1 files changed, 29 insertions, 20 deletions
@@ -1,17 +1,16 @@ -Loading mkin +ℹ Loading mkin Loading required package: parallel -Testing mkin +ℹ Testing mkin ✔ | OK F W S | Context ✔ | 5 | AIC calculation -✔ | 2 | Export dataset for reading into CAKE -✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [1.0 s] -✔ | 4 | Calculation of FOCUS chi2 error levels [0.5 s] -✔ | 7 | Fitting the SFORB model [3.5 s] -✔ | 5 | Analytical solutions for coupled models [3.2 s] +✔ | 5 | Analytical solutions for coupled models [3.3 s] ✔ | 5 | Calculation of Akaike weights -✔ | 12 | Confidence intervals and p-values [1.1 s] -✔ | 14 | Error model fitting [4.5 s] +✔ | 2 | Export dataset for reading into CAKE +✔ | 12 | Confidence intervals and p-values [1.3 s] +✔ | 14 | Error model fitting [4.7 s] ✔ | 5 | Time step normalisation +✔ | 4 | Calculation of FOCUS chi2 error levels [0.5 s] +✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8 s] ✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3 s] ✔ | 1 | Fitting the logistic model [0.2 s] ✔ | 35 1 | Nonlinear mixed-effects models [27.1 s] @@ -20,25 +19,35 @@ Skip (test_mixed.R:161:3): saem results are reproducible for biphasic fits Reason: Fitting with saemix takes around 10 minutes when using deSolve ──────────────────────────────────────────────────────────────────────────────── ✔ | 2 | Test dataset classes mkinds and mkindsg +✔ | 10 | Special cases of mkinfit calls [0.4 s] ✔ | 1 | mkinfit features [0.3 s] -✔ | 10 | Special cases of mkinfit calls [0.3 s] -✔ | 8 | mkinmod model generation and printing [0.2 s] -✔ | 3 | Model predictions with mkinpredict [0.2 s] -✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.8 s] +✔ | 8 | mkinmod model generation and printing [0.3 s] +✔ | 3 | Model predictions with mkinpredict [0.3 s] +✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.7 s] ✔ | 9 | Nonlinear mixed-effects models with nlme [8.1 s] -✔ | 16 | Plotting [2.0 s] +✖ | 14 2 | Plotting [1.9 s] +──────────────────────────────────────────────────────────────────────────────── +Failure (test_plot.R:40:5): Plotting mkinfit, mmkin and mixed model objects is reproducible +Figures don't match: mixed-model-fit-for-saem-object-with-saemix-transformations.svg + + +Failure (test_plot.R:55:5): Plotting mkinfit, mmkin and mixed model objects is reproducible +Figures don't match: mixed-model-fit-for-saem-object-with-mkin-transformations.svg + +──────────────────────────────────────────────────────────────────────────────── ✔ | 4 | Residuals extracted from mkinfit models ✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5 s] -✔ | 4 | Summary [0.1 s] +✔ | 7 | Fitting the SFORB model [3.9 s] ✔ | 1 | Summaries of old mkinfit objects -✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.3 s] -✔ | 9 | Hypothesis tests [8.3 s] -✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.5 s] +✔ | 4 | Summary [0.1 s] +✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2 s] +✔ | 9 | Hypothesis tests [8.2 s] +✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.4 s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 69.4 s +Duration: 70.0 s ── Skipped tests ────────────────────────────────────────────────────────────── ● Fitting with saemix takes around 10 minutes when using deSolve (1) -[ FAIL 0 | WARN 0 | SKIP 1 | PASS 206 ] +[ FAIL 2 | WARN 0 | SKIP 1 | PASS 204 ] |