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authorJohannes Ranke <jranke@uni-bremen.de>2021-04-21 16:40:50 +0200
committerJohannes Ranke <jranke@uni-bremen.de>2021-04-21 16:40:50 +0200
commit9907f17aa98bddfe60e82a71c70a2fea914a02f7 (patch)
tree4d5d959cdd19f32068bae406372df4b8a8f59fd6 /test.log
parent34d1c5f23edfb60548bc5a9dd99c2f3af92acef1 (diff)
parentc74b79c983fe9fc872bac1262040e82f16049477 (diff)
Merge branch 'master' into saemix
Diffstat (limited to 'test.log')
-rw-r--r--test.log49
1 files changed, 29 insertions, 20 deletions
diff --git a/test.log b/test.log
index 5f50c623..f2a60729 100644
--- a/test.log
+++ b/test.log
@@ -1,17 +1,16 @@
-Loading mkin
+ℹ Loading mkin
Loading required package: parallel
-Testing mkin
+ℹ Testing mkin
✔ | OK F W S | Context
✔ | 5 | AIC calculation
-✔ | 2 | Export dataset for reading into CAKE
-✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [1.0 s]
-✔ | 4 | Calculation of FOCUS chi2 error levels [0.5 s]
-✔ | 7 | Fitting the SFORB model [3.5 s]
-✔ | 5 | Analytical solutions for coupled models [3.2 s]
+✔ | 5 | Analytical solutions for coupled models [3.3 s]
✔ | 5 | Calculation of Akaike weights
-✔ | 12 | Confidence intervals and p-values [1.1 s]
-✔ | 14 | Error model fitting [4.5 s]
+✔ | 2 | Export dataset for reading into CAKE
+✔ | 12 | Confidence intervals and p-values [1.3 s]
+✔ | 14 | Error model fitting [4.7 s]
✔ | 5 | Time step normalisation
+✔ | 4 | Calculation of FOCUS chi2 error levels [0.5 s]
+✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8 s]
✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3 s]
✔ | 1 | Fitting the logistic model [0.2 s]
✔ | 35 1 | Nonlinear mixed-effects models [27.1 s]
@@ -20,25 +19,35 @@ Skip (test_mixed.R:161:3): saem results are reproducible for biphasic fits
Reason: Fitting with saemix takes around 10 minutes when using deSolve
────────────────────────────────────────────────────────────────────────────────
✔ | 2 | Test dataset classes mkinds and mkindsg
+✔ | 10 | Special cases of mkinfit calls [0.4 s]
✔ | 1 | mkinfit features [0.3 s]
-✔ | 10 | Special cases of mkinfit calls [0.3 s]
-✔ | 8 | mkinmod model generation and printing [0.2 s]
-✔ | 3 | Model predictions with mkinpredict [0.2 s]
-✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.8 s]
+✔ | 8 | mkinmod model generation and printing [0.3 s]
+✔ | 3 | Model predictions with mkinpredict [0.3 s]
+✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.7 s]
✔ | 9 | Nonlinear mixed-effects models with nlme [8.1 s]
-✔ | 16 | Plotting [2.0 s]
+✖ | 14 2 | Plotting [1.9 s]
+────────────────────────────────────────────────────────────────────────────────
+Failure (test_plot.R:40:5): Plotting mkinfit, mmkin and mixed model objects is reproducible
+Figures don't match: mixed-model-fit-for-saem-object-with-saemix-transformations.svg
+
+
+Failure (test_plot.R:55:5): Plotting mkinfit, mmkin and mixed model objects is reproducible
+Figures don't match: mixed-model-fit-for-saem-object-with-mkin-transformations.svg
+
+────────────────────────────────────────────────────────────────────────────────
✔ | 4 | Residuals extracted from mkinfit models
✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5 s]
-✔ | 4 | Summary [0.1 s]
+✔ | 7 | Fitting the SFORB model [3.9 s]
✔ | 1 | Summaries of old mkinfit objects
-✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.3 s]
-✔ | 9 | Hypothesis tests [8.3 s]
-✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.5 s]
+✔ | 4 | Summary [0.1 s]
+✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2 s]
+✔ | 9 | Hypothesis tests [8.2 s]
+✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.4 s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 69.4 s
+Duration: 70.0 s
── Skipped tests ──────────────────────────────────────────────────────────────
● Fitting with saemix takes around 10 minutes when using deSolve (1)
-[ FAIL 0 | WARN 0 | SKIP 1 | PASS 206 ]
+[ FAIL 2 | WARN 0 | SKIP 1 | PASS 204 ]

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